Pairwise Alignments

Query, 339 a.a., D-alanyl-D-alanine carboxypeptidase from Dechlorosoma suillum PS

Subject, 321 a.a., D-alanyl-D-alanine endopeptidase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  223 bits (568), Expect = 5e-63
 Identities = 121/285 (42%), Positives = 178/285 (62%), Gaps = 6/285 (2%)

Query: 51  TSKPATASKPKVISQNVRNSNVRRASAVPADFGEAQRLAVQSSAALVLDQGNGEVIYQKN 110
           +S    A+     S +V   +    +  P      Q +A  S  ALV+D    E++Y  N
Sbjct: 15  SSLTVAATAHSADSASVTTKSTATKATTPKKAHTKQEVAANS--ALVVDLKTNEILYSSN 72

Query: 111 ASAVVPIASITKLMTAMVVLDSQPNLSAPVTIGEEDIDTLKGSRSRLSVGTVLTREHALL 170
             AV PIAS+TKLMTAMV LD++  +   +TI  +D   ++G  SR+ +G+ ++R+  LL
Sbjct: 73  PDAVRPIASVTKLMTAMVTLDAKLPMDEKLTINIKDTKEMRGVYSRVRIGSEISRKEMLL 132

Query: 171 LALMSSENRAAHTLARHYPGGLHAFVEAMNRKARSLGMMDTHFQDPTGLTSNNVSTANDL 230
           L LMSSENRAA +LA HYPGG  AF++AMN KA++LGM ++ F +PTGL++ NVS+A DL
Sbjct: 133 LTLMSSENRAAASLAHHYPGGHKAFIKAMNAKAKALGMKNSRFVEPTGLSAKNVSSARDL 192

Query: 231 AKMVAAAHTYPLIREFSTTSGAMVETNGR---LLEYHNTNALVKSTTWDIGLSKTGYIQE 287
             ++ A+  YP++ + S+T    V T G+    L++ NTN LV    WDI L+KTG+   
Sbjct: 193 VVLLKASQGYPMLGQLSSTEKKTV-TFGKPKYSLDFRNTNRLVYKDNWDIHLTKTGFTNA 251

Query: 288 AGKCLVMQARVAERPVVIVLLDSAGKMTRIGDANRIKRWMESASL 332
           AG CLVM+  +A+R V  V+LD+ GK T + DANR++ W+E+  +
Sbjct: 252 AGHCLVMRTEMAKRKVAFVVLDAKGKYTHMADANRLRNWLETGKV 296