Pairwise Alignments

Query, 212 a.a., Probable alternative RNA polymerase sigma-D factor SigD from Mycobacterium tuberculosis H37Rv

Subject, 186 a.a., RNA polymerase sigma factor, sigma-70 family from Pseudomonas stutzeri RCH2

 Score = 66.2 bits (160), Expect = 4e-16
 Identities = 52/170 (30%), Positives = 77/170 (45%), Gaps = 5/170 (2%)

Query: 32  VVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCLATITALPRY 91
           ++ +AV GDR A   ++   +  V  + R  +G+ +     A D+ QE  +    ALPR+
Sbjct: 8   LIQQAVRGDRQAFGALVRAHQARVFHFIRRLLGSTDE----AADLTQETFIRAYQALPRW 63

Query: 92  RDRGRPFLAFLYGIAAHKVADAHRAAGRDRAYPAETLPERWSADAGPEQMAIEADSVTRM 151
           R   R    +L  IA +   D  R   R     A+   E       P +    A  +  +
Sbjct: 64  RPEAR-LQTWLLQIARNAALDLLRQRQRHVVLAADEQAEPIDPAPSPLRRLQSARDLEML 122

Query: 152 NELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRVAQHRALQRL 201
             LL  LP +QREIL+LR V GLS +E AA +    G V+    RA + L
Sbjct: 123 ERLLARLPHEQREILLLREVEGLSYDELAATLQLNAGTVKSRLARAREAL 172