Pairwise Alignments

Query, 212 a.a., Probable alternative RNA polymerase sigma-D factor SigD from Mycobacterium tuberculosis H37Rv

Subject, 190 a.a., RNA polymerase sigma factor from Burkholderia phytofirmans PsJN

 Score = 60.5 bits (145), Expect = 2e-14
 Identities = 56/190 (29%), Positives = 93/190 (48%), Gaps = 14/190 (7%)

Query: 15  TLEISPSMTMQGERLDAVVAEAVAGDRNALREVLETIRPIVVRYCRARVGTVERSGLSAD 74
           T E  P+  ++ ERL A+    + G+  A +  L  +   +  + R R+  ++      +
Sbjct: 4   TTENGPASPVE-ERLKALFVRGLDGNAAAYQAFLSDLTGHLRGFLRKRLFYLQDD---VE 59

Query: 75  DVAQEVCLATITALPRYRDRGRPFLAFLYGIAAHKVADAHRAAGRDRAY--PAETLPERW 132
           D+ QE+ LA       YR   +P  A+++ IA +K+AD  RA  R  A   P +   E +
Sbjct: 60  DLVQEILLAVHNGRHTYRP-DQPLTAWVHAIARYKLADFFRARSRREALHMPLDDELEIF 118

Query: 133 SA-DAGPEQMAIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVR 191
           +  D  P      A++   +++LLE LP +QR  ++   + GLS  ETA   G +  AV+
Sbjct: 119 ATCDVEP------AEARRDLSKLLEQLPDRQRLPILHVKLEGLSVTETAKLTGLSESAVK 172

Query: 192 VAQHRALQRL 201
           V  HR L+ L
Sbjct: 173 VGVHRGLKAL 182