Pairwise Alignments

Query, 212 a.a., Probable alternative RNA polymerase sigma-D factor SigD from Mycobacterium tuberculosis H37Rv

Subject, 192 a.a., RNA polymerase sigma factor RpoE (RefSeq) from Shewanella sp. ANA-3

 Score = 50.4 bits (119), Expect = 2e-11
 Identities = 53/193 (27%), Positives = 83/193 (43%), Gaps = 18/193 (9%)

Query: 24  MQGERLDAVVAEAVA-GDRNALREVLETIRPIVVRYCRARVGTVERSGLSADDVAQEVCL 82
           M G+  D  + E V  GD+NA   ++   +  VV    + +    R+     DVAQE  +
Sbjct: 1   MSGQISDQQLVERVQRGDKNAFNLLVLKYQSKVV----SLISRYVRNQADVTDVAQEAFI 56

Query: 83  ATITALPRYRDRGRPFLAFLYGIAA-----HKVADAHRAAGRDRAYPAETLPERWSAD-- 135
               ALP +R     F  +LY IA      + V+   RA   D    AE       +D  
Sbjct: 57  KAYRALPNFRGES-AFYTWLYRIAVNTAKNYLVSQGRRAPAND--VDAEDAEYYEGSDAL 113

Query: 136 ---AGPEQMAIEADSVTRMNELLEILPAKQREILILRVVVGLSAEETAAAVGSTTGAVRV 192
              A PE++ +  +    + E LE LP + R  + LR + G+S E+ A  +    G VR 
Sbjct: 114 KEFASPERLMLSDEIKKVVFETLETLPEELRMAISLRELDGMSYEDIAIIMDCPVGTVRS 173

Query: 193 AQHRALQRLKDEI 205
              RA + +  ++
Sbjct: 174 RIFRAREAIDKKL 186