Pairwise Alignments

Query, 412 a.a., Conserved hypothetical protein from Mycobacterium tuberculosis H37Rv

Subject, 358 a.a., polysaccharide biosynthesis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  113 bits (282), Expect = 1e-29
 Identities = 99/371 (26%), Positives = 167/371 (45%), Gaps = 26/371 (7%)

Query: 42  RPSFPGPAELAEDFVQIAQANWYTNFGPNERRFARALRDYLGPHLHVATLANGTLALLAA 101
           +P  P   +L     ++    WYTNFGP        L +YLG   ++  ++NGTLA+  A
Sbjct: 6   KPVAPNLQKLNSYLERVHDTGWYTNFGPLHNELTEKLEEYLGVS-NLLLVSNGTLAIQLA 64

Query: 102 LHVSFGAGTRDRYLLMPSFTFVGVAQAALWTGYRPWFIDIDANTWQPCVHSARAVIERFR 161
             V        +  +   F+FV  + + LW G    + DI+ ++   C        +   
Sbjct: 65  AKVF-----NVKQTITTPFSFVATSSSLLWQGIDLAYSDIERSSLNICPEELEKNWKS-N 118

Query: 162 DRIAGILLANVFGVGNP-QISVWEELAAEWELPIVLDSAAGFGSTYADGERLGGRGACEI 220
           D    +L  +V+G  NP  +   +E+A ++   I+ D+A  FG    +   L   G    
Sbjct: 119 DSYDSLLATHVYG--NPCDVQKIDEIAKKYNKKIMYDAAHAFGIKVGNKSVLSF-GDAST 175

Query: 221 FSFHATKPFAVGEGGALVSRDPRLVEHAYKFQNFGLVQTRESIQLGMNGKLSEISAAIGL 280
            SFHATK F   EGGA++ +D    + A    NFG+         G+N KL+E  AA+GL
Sbjct: 176 LSFHATKVFHTVEGGAVIFKDRNHFDEAKSLINFGIQNDGTLGTPGINAKLNEYQAAVGL 235

Query: 281 RQLVGLDRRLASRRKVLECYR---TGMADAGVRFQD-NANVASLCFASACCTSADHKAAV 336
             L  +D  +  R  + E YR   + + +  +  +D N N A   +     ++   +  +
Sbjct: 236 CLLESIDDIICHRSNLFEIYRKELSNVIELPLWHRDSNYNGA---YMPILPSTEVERLKI 292

Query: 337 LGSLRRHAIEARDYYNPPQHRHPYFVTNAEL-VESTDLAVTADICSRIVSLPVHDHMAPD 395
              L+ + I+ R Y+ P        +  A L V+S +  V+  I    + LP+H +M  +
Sbjct: 293 GEQLKANNIQFRRYFYPS-------LDKAYLRVKSFNCPVSNYIAENALCLPLHMYMTKE 345

Query: 396 DVARVVAAVQE 406
           DV ++ A ++E
Sbjct: 346 DVLKITATIKE 356