Pairwise Alignments

Query, 992 a.a., Probable conserved transmembrane protein from Mycobacterium tuberculosis H37Rv

Subject, 955 a.a., hypothetical protein from Synechococcus elongatus PCC 7942

 Score =  350 bits (897), Expect = e-100
 Identities = 253/839 (30%), Positives = 383/839 (45%), Gaps = 83/839 (9%)

Query: 116 IGIPAAIGLLAGIVAQSYWARIQLFLHGGDFGVRDPQFGRDLGFYAFELPFYRLMLSYML 175
           IG+ +   L   ++    W RI           RDP F +DL FY F LP   ++   + 
Sbjct: 168 IGLSSLTSLAIALLTSREWLRIWPAFAAESVSDRDPIFQQDLAFYLFRLPALEVLQFDLW 227

Query: 176 VSVFLAFVANLVAHYIFGGIRLSGRTGALSRSARVQLVSLVGVLVLLKAVAYWLDRYELL 235
           + +  +F A L  +Y+      +      + S +  LV L   + L  A   WL + +LL
Sbjct: 228 IGLAFSFCAVLAVYYLAKQSVSNAEFRGFAPSQQRHLVRLAIAIALFLAGHCWLAQRQLL 287

Query: 236 SHTRGGKPFTGAGYTDINAVLPAKLILMAIALICAAAVF-----SAIALRDLRIPAIGLV 290
               G     G G+TD    LP   + M +  I A A+F       +  R +R       
Sbjct: 288 FSELGA--VYGIGFTDRWVKLPLLQVWMILFGIAAIALFWQSRRGLLPQRWIR----NFQ 341

Query: 291 LLLLSSLIVGAGWPLIVEQISVKPNAAQKESEYISRSITATRQAYGLTSDVVTYRNYSGD 350
           L  ++S+++    P IV+Q+ V+PN   +E  Y+ ++I  TR+A+GL  D +  R +   
Sbjct: 342 LAAIASVLIWVTLPAIVQQLVVQPNEIARELPYLKQAILFTRRAFGL--DQIETRTFDPQ 399

Query: 351 SPATAQQVAADRATTSNIRLLDPTIVSPAFTQFQQGKNFYYFPDQLSIDRYLDRNG---N 407
                  +AA+R T  NIRL D   +  +  Q QQ + +Y FP    IDRY  +      
Sbjct: 400 PSLNRAVLAANRETVQNIRLWDTRPLLQSNRQLQQIRLYYSFPSA-QIDRYRLQTSFGDA 458

Query: 408 LRDYVVAARELNPDRLIDNQRDWINRHTVYTHGNGFIASPANTVRGIANDPNQNGGYPEF 467
           L+  ++AAREL+   +    + W+N H VYTHG GF  SP N+        +   G P +
Sbjct: 459 LQQVIIAARELDYTAIPAAAKTWVNEHLVYTHGYGFTLSPVNS--------SAPDGLPRY 510

Query: 468 LVNVVGANGTVVSDGPAPL-----------DQPRIYFGPVISNTSADYAIVGRNGDDREY 516
            V  +GAN  ++ D    +           + PRIY+G +  N       V      +E 
Sbjct: 511 FVKDIGANTRIIGDASLGISTEAVKAAISTENPRIYYGQLTRN------YVFTPSRTQEL 564

Query: 517 DYETNIDTKRYTYTGSGGVPLGGWLARSVFAAKFAERNFLFSNVIGSNSKILFNRDPAQR 576
           DY +  D     Y G GGV LG +  R +F+    +    FS  + + +++LF R    R
Sbjct: 565 DYPSGNDNVYNIYDGKGGVTLGNYAQRLLFSLYLRDWRLPFSGDLTAQTRVLFRRQIEDR 624

Query: 577 VEAVAPWLTTDSAVYPAIVN-----------KRLVWIVDGYTTLDNYPYSELTSLSSATA 625
           V A+AP+L  D+  Y   VN             L WI+D YT  D YPY          A
Sbjct: 625 VRAIAPFLRYDAEPYLVSVNADTAEASGLGRSSLFWILDAYTVSDRYPY----------A 674

Query: 626 DSNEVAFNRLVPDKKVSYIRNSVKATVDAYDGTVTLYQQDEKDPVLKAWMQVFPGTVKPK 685
           D  E  FN         YIRNSVK  +DAY+G+V  Y  D KDP+++ W ++FP   +P 
Sbjct: 675 DPGEQPFN---------YIRNSVKVIIDAYNGSVQFYIVDPKDPLIQTWSRLFPSLFQPI 725

Query: 686 SDIAPELAEHLRYPEDLFKVQRMLLAKYHVNDPVTFFSTSDFWDVPLDPNPTASSYQPPY 745
             +AP L  HLRYP DLFK Q   L  YHV DP  F++  D W  P +     ++   PY
Sbjct: 726 DAMAPVLRSHLRYPTDLFKAQSSQLLTYHVLDPQVFYNRDDQWAYPREIYAGETATVQPY 785

Query: 746 YIVAKNIAKDDNSASYQLISAMNRFKRDYLAAYISASSDPATYGNLTVLTIPGQ--VNGP 803
           Y++ +       S  + +++      R+ + A+++  SD   YG L +   P Q  + GP
Sbjct: 786 YLITR--LPTAASEEFLILTPFTPLGRNNMIAWLAGRSDGEEYGRLLLYEFPRQRLIFGP 843

Query: 804 KLANNAITTDPAVSQDLGVIGRDNQNRIRWGNLLTLPVARGGLLYVEPVYASPGASDAAS 863
           +     I  DP +S+ + +  R+  +R   GNLL +P+ +  LLYVEP+Y       + +
Sbjct: 844 EQITARINQDPQISEQITLWNREG-SRAAEGNLLVIPIDQ-ALLYVEPLYLEA----SRN 897

Query: 864 SYPRLIRVAMMYNDKVGYGPTVRDALTGLFGPGAGATATGIAPTEAAVPPSPAANPPPP 922
           S P L RV   Y D++   P++ ++L  LF P +    T +         S   NP  P
Sbjct: 898 SLPALTRVITAYQDRIVMTPSLLESLQKLF-PDSTPALTPLEQPVLTTEQSAVLNPDQP 955



 Score = 37.7 bits (86), Expect = 4e-06
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 8/79 (10%)

Query: 9  MPK-LTRRSRILIMIALGVIVLLLAGPRLIDAYVDWLWFGELGYRSVFTTMLATRIVVCL 67
          MP+ L+R    +  IALG+ +L          +++ LWF  LG  +VF   LA + ++  
Sbjct: 1  MPRHLSRWGLAIAAIALGLSLLTRI-------HIETLWFTALGIPTVFLRRLAVQALLFS 53

Query: 68 VAGVVVGGIVFGGLALAYR 86
          V G+ + G++ G L  A R
Sbjct: 54 VVGIAITGLIGGNLRWAAR 72