Pairwise Alignments

Query, 900 a.a., Probable translation initiation factor if-2 InfB from Mycobacterium tuberculosis H37Rv

Subject, 954 a.a., translation initiation factor IF-2 from Herbaspirillum seropedicae SmR1

 Score =  543 bits (1398), Expect = e-158
 Identities = 349/848 (41%), Positives = 479/848 (56%), Gaps = 50/848 (5%)

Query: 56  KPAPAKGTAKSPGKGPDKSLDKALDAAIDMAAGNGKATAAPAKAADSGGAAIVSPTTPAA 115
           + A AK       +  +++  +A   A + AA   +A  A A A  +  AA      PAA
Sbjct: 151 RAAQAKAAELEQQRAREEAEAEAKRQAAEAAAAAAEAEKAKAAAPAAAAAAPAPAVDPAA 210

Query: 116 PEPPTAVPPSPQAPHPGMAPGARPGPVPKPGIRTPRVGN-NPFSSAQPADRPIPRPPAPR 174
            E   A     +      A  A          R           +   A R + + P P 
Sbjct: 211 EEKKRAAAEEAKKKAEAAAKEAADRAAAADRARKAVEDEVAQIKAMMNAPRRVIKAPEPA 270

Query: 175 PGTARPGVPRPGASPGSMPPRPGGAVGGARPPRPGAPRPGGRPGAPGAGRSDAGGGNYRG 234
           P  A+        S G++      A  G +           +     A  S     + + 
Sbjct: 271 PAAAK-------TSEGTLHKPATAAKPGEKKDDKKPAVAADKKSIKSANVSSTWQDDAKK 323

Query: 235 GGVGAAPGTGFRGRPGGGGGGRPGQRGGAAGAFGRPGGAPRRGRKSKRQKRQEYDSMQAP 294
            G G     G + R   GGGGR G R G  G         RR      Q+   +      
Sbjct: 324 RGTG-----GMKSRGATGGGGRDGWRAGPKG---------RRHSHGDDQRESNFQVPTEA 369

Query: 295 VVGGVRLPHGNGETIRLARGASLSDFADKIDANPAALVQALFNLGEMVTATQSVGDETLE 354
           VV  V +P    ETI +A      + A K+    + +++ L  LG+MVT  Q +  ET  
Sbjct: 370 VVHDVYVP----ETITVA------EVAHKMAVKASEVIKHLMKLGQMVTINQVLDQETAM 419

Query: 355 LLGSEMNYNVQVVSPEDEDRELLESFDLSYGEDEGGEEDLQVRPPVVTVMGHVDHGKTRL 414
           ++  EM +       +D +  L+E      GE+ G  E L  R PVVTVMGHVDHGKT L
Sbjct: 420 IVVEEMGHRAHAAKLDDPEALLVE------GEEHGDAEALP-RAPVVTVMGHVDHGKTSL 472

Query: 415 LDTIRKANVREAEAGGITQHIGAYQVAVDLDGSQRLITFIDTPGHEAFTAMRARGAKATD 474
           LD IR+  V   EAGGITQHIGAY V    +  + +ITF+DTPGHEAFTAMRARGAKATD
Sbjct: 473 LDYIRRTKVASGEAGGITQHIGAYHV----ETPRGMITFLDTPGHEAFTAMRARGAKATD 528

Query: 475 IAILVVAADDGVMPQTVEAINHAQAADVPIVVAVNKIDKEGADPAKIRGQLTEYGLVPEE 534
           I ILVVAADDGVMPQT EAI HA+A  VP+VVA+NKIDK GA+P +++ +L    +VPEE
Sbjct: 529 IVILVVAADDGVMPQTKEAIAHAKAGGVPLVVAINKIDKPGANPDRVKQELIAEEVVPEE 588

Query: 535 FGGDTMFVDISAKQGTNIEALEEAVLLTADAALDLRANPDMEAQGVAIEAHLDRGRGPVA 594
           +GGD  F+ +SAK G  I++L E VLL A+  L+L+A  ++ A+G+ IEA LD+GRGPVA
Sbjct: 589 YGGDAPFIPVSAKTGEGIDSLLENVLLQAE-VLELKAPVEVPARGLVIEAKLDKGRGPVA 647

Query: 595 TVLVQRGTLRVGDSVVAGDAYGRVRRMVDEHGEDVEVALPSRPVQVIGFTSVPGAGDNFL 654
           T+LVQ GTL+ GD V+AG AYGRVR M+DE+G+++  A PS PV++ G T VP AG+  +
Sbjct: 648 TILVQSGTLKRGDVVLAGSAYGRVRAMLDENGKNIAEAGPSLPVEIQGLTEVPSAGEEVV 707

Query: 655 VVDEDRIARQIADRRSARKRNALAARSRKRISLEDLDSALK--ETSQLNLILKGDNAGTV 712
           V+ ++R AR+I   R  + R+   A+ ++   LE++   +   E   L +I+K D  G+ 
Sbjct: 708 VMTDERKAREIGLFRQGKFRDVKLAK-QQAAKLENMFDQMTEGEVKNLPMIIKTDVQGSQ 766

Query: 713 EALEEALMGIQVDDEVVLRVIDRGVGGITETNVNLASASDAVIIGFNVRAEGKATELASR 772
           EAL ++L  +   +EV ++V+   VGGI+E +VNLA AS AVIIGFN RA+  A +LA  
Sbjct: 767 EALVQSLQKLST-NEVRVQVVHAAVGGISENDVNLAVASKAVIIGFNTRADASARKLAEA 825

Query: 773 EGVEIRYYSVIYQAIDEIEQALRGLLKPIYEENQLGRAEIRALFRSSKVGLIAGCLVTSG 832
            GV+IRYY++IY A+DE++ A+ G+L P   E  LG  EIR +F  SKVG IAGC V  G
Sbjct: 826 SGVDIRYYNIIYDAVDEVKAAMSGMLSPEKREQALGLVEIRQVFVVSKVGSIAGCYVLEG 885

Query: 833 VMRRNAKARLLRDNIVVAENLSIASLRREKDDVTEVRDGFECGLTL-GYADIKEGDVIES 891
           +++R ++ RLLR+N+VV     + SL+R KDDV EV+ GFECGL+L GY DI+ GD +E 
Sbjct: 886 LVKRGSQVRLLRNNVVVWTG-ELDSLKRFKDDVKEVKSGFECGLSLKGYNDIEVGDQLEI 944

Query: 892 YELVQKER 899
           +E+ +  R
Sbjct: 945 FEVQEVAR 952