Pairwise Alignments

Query, 790 a.a., RecA protein (recombinase A) [contains: endonuclease PI-MTUI (MTU RecA intein)]. from Mycobacterium tuberculosis H37Rv

Subject, 357 a.a., recombinase A (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score =  336 bits (861), Expect = 1e-96
 Identities = 183/306 (59%), Positives = 227/306 (74%), Gaps = 15/306 (4%)

Query: 4   TPD--REKALELAVAQIEKSYGKGSVMRLGDEARQPISVIPTGSIALDVALGIGGLPRGR 61
           TP+  R +AL  A++ IE+ YG+GSVM+L D A   I VIPTGSI LD+ALG+GG+PRGR
Sbjct: 8   TPEEMRREALSTALSTIERKYGQGSVMKLSDTAHVNIPVIPTGSIGLDLALGVGGIPRGR 67

Query: 62  VIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPD 121
           V EIYGPESSGKTT+ALH +A  Q  GG AAFIDAEHALD +YA++LGV TD LL+SQPD
Sbjct: 68  VSEIYGPESSGKTTLALHIIAECQKLGGTAAFIDAEHALDTNYARRLGVKTDELLISQPD 127

Query: 122 TGEQALEIADMLIRSGALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTG 181
            GEQAL+IADML+RS A+DIVVIDSVAAL+P+AELEG MG+  VG QARLMS ALRK+TG
Sbjct: 128 FGEQALDIADMLVRSSAVDIVVIDSVAALIPQAELEGVMGEMQVGGQARLMSHALRKLTG 187

Query: 182 ALNNSGTTAIFINQLRDKIGVM-FGSPETTTGGKALKFYASVRMDVRRVETLKDGTNAVG 240
            ++ S T  IFINQ+R KIG M +G+PETTTGG ALKFY+S+RMD+R+++TLKD     G
Sbjct: 188 TIHKSRTAVIFINQIRMKIGTMGYGNPETTTGGNALKFYSSIRMDIRKIQTLKDKEEVYG 247

Query: 241 NRTRVKVVKNKCLAE-GTRIFDPVTGT-THRIEDVVDGRKPIHVVAAAKDGTLHARPVVS 298
           +RTRVKVVKNK        +FD + GT   R  +++D    + ++   K G        S
Sbjct: 248 SRTRVKVVKNKVAPPFREALFDILYGTGISRTGELIDLGSDVGII--EKSG--------S 297

Query: 299 WFDQGT 304
           WF  G+
Sbjct: 298 WFAFGS 303



 Score = 99.4 bits (246), Expect = 3e-25
 Identities = 57/129 (44%), Positives = 77/129 (59%), Gaps = 3/129 (2%)

Query: 657 YSVIREVLPTRRARTFDLEVEELHTLVAEGVVVHNCSPPFKQAEFDILYGKGISREGSLI 716
           YS IR  +  R+ +T   + E   +     VV +  +PPF++A FDILYG GISR G LI
Sbjct: 226 YSSIR--MDIRKIQTLKDKEEVYGSRTRVKVVKNKVAPPFREALFDILYGTGISRTGELI 283

Query: 717 DMGVDQGLIRKSGAWFTYEGEQLGQGKENARNFLVENADVADEIEKKIKEKLG-IGAVVT 775
           D+G D G+I KSG+WF +  E+LGQGKEN R  L EN  +   +E K+ E LG + + V 
Sbjct: 284 DLGSDVGIIEKSGSWFAFGSERLGQGKENVRALLEENEALRLNVEAKLIEHLGMMPSKVV 343

Query: 776 DDPSNDGVL 784
           D   N G +
Sbjct: 344 DPDDNAGAM 352