Pairwise Alignments

Query, 274 a.a., Probable sugar-transport integral membrane protein ABC transporter UspB from Mycobacterium tuberculosis H37Rv

Subject, 278 a.a., carbohydrate ABC transporter permease from Rhodopseudomonas palustris CGA009

 Score =  159 bits (401), Expect = 8e-44
 Identities = 89/274 (32%), Positives = 157/274 (57%), Gaps = 4/274 (1%)

Query: 4   PSRVSNTAVYAVLTIGAVITLSPFLLGLLTSFTSAHQFATGTPLQLPRPPTLANYADIA- 62
           PS +S++  +A L +GAV+ L+PF+  L T+     +  +     +P    L     IA 
Sbjct: 6   PSLISSSFRHAALMVGAVLMLAPFVWMLSTASKPPEEIYSSDLHLIPHHFALWENLRIAF 65

Query: 63  -DAGFRRAAVVTALMTAVILLGQLTFSVLAAYAFARLQFRGRDALFWVYVATLMVPGTVT 121
             A   R  +   ++T  I   Q+  ++ AAYA A+L+F GR ALF + +  +++P   T
Sbjct: 66  GKADLGRFLLNGVIVTVAIFTCQVLIALPAAYALAKLRFVGRKALFALVLFGILIPPQAT 125

Query: 122 VVPLYLMMAQLGLRNTFWALVLPFMFGSPYAIFLLREHFRLIPDDLINAARLDGANTLDV 181
            +P++L++ QLG  +++ ALVLPF   S + IFL+R+ F  +PDDL++AAR+DG +   +
Sbjct: 126 AIPVFLLLHQLGALDSYAALVLPFTI-SVFGIFLMRQFFMTVPDDLLDAARMDGMSEFAI 184

Query: 182 IVHVVIPSSRPVLAALAMITVVSQWNNFMWPLVITSGHKWRVLTVATADLQ-SRFNDQWT 240
           +  V++P++ P + A  + +VV+ WN++ WPL++ +  ++    +A A  + +     + 
Sbjct: 185 VWRVMLPTAIPAVTAFGIFSVVAHWNDYFWPLIVLNSQQYYTPPLAVAHFRNAEAGTSYG 244

Query: 241 LVMAATTVAIVPLIALFVTFQRHIVASIVVSGLK 274
            +MAA  V I PL+  F+  QR  +  I ++GLK
Sbjct: 245 PLMAAAIVIITPLVVAFLLAQRRFIEGITLTGLK 278