Pairwise Alignments

Query, 274 a.a., Probable sugar-transport integral membrane protein ABC transporter UspB from Mycobacterium tuberculosis H37Rv

Subject, 300 a.a., sugar ABC transporter permease from Herbaspirillum seropedicae SmR1

 Score =  130 bits (326), Expect = 4e-35
 Identities = 81/273 (29%), Positives = 135/273 (49%), Gaps = 17/273 (6%)

Query: 12  VYAVLTIGAVITLSPFLLGLLTSFTSAHQFATGTPLQLPRPPTLANYADIADAGFRRAAV 71
           V+ VL + AVI L P  L L+ S  + +    G P+ LP   TL        AGF++   
Sbjct: 35  VHTVLCLYAVIALFPIALILINSVKTRNAIFEG-PMALPTAETLTF------AGFQKVLA 87

Query: 72  VTALM---------TAVILLGQLTFSVLAAYAFARLQFRGRDALFWVYVATLMVPGTVTV 122
            T  +         T   L   + F  +AA+A    +F G  AL +     +M+P  +  
Sbjct: 88  GTHFLLYFGNSLAVTVAALFLIVLFGAMAAWALTEYRFFGNRALNFFIAIGIMIPIRLGT 147

Query: 123 VPLYLMMAQLGLRNTFWALVLPFMF-GSPYAIFLLREHFRLIPDDLINAARLDGANTLDV 181
           V +  ++  L L NT  ALVL +   G P A+ +L E  R IP +L +AAR DG   L +
Sbjct: 148 VSILQLVVALDLINTRTALVLVYTAQGLPLAVMILSEFMRQIPGELKDAARCDGVGELSI 207

Query: 182 IVHVVIPSSRPVLAALAMITVVSQWNNFMWPLVITSGHKWRVLTVATADLQSRFNDQWTL 241
              V++P  RP +A +A+ T++  WN+  +PL++  G   R +T+       ++   W  
Sbjct: 208 FFRVILPLLRPAIATVAVFTMIPAWNDLWFPLILAPGEDTRTVTLGVQQFIGQYATDWNS 267

Query: 242 VMAATTVAIVPLIALFVTFQRHIVASIVVSGLK 274
           V+AA ++A++P++ L++ F R ++  +    +K
Sbjct: 268 VLAALSMAVIPVLLLYMAFSRQLIRGLTSGAVK 300