Pairwise Alignments

Query, 274 a.a., Probable sugar-transport integral membrane protein ABC transporter UspB from Mycobacterium tuberculosis H37Rv

Subject, 276 a.a., ABC transporter permease from Herbaspirillum seropedicae SmR1

 Score =  167 bits (422), Expect = 3e-46
 Identities = 97/259 (37%), Positives = 149/259 (57%), Gaps = 10/259 (3%)

Query: 20  AVITLSPFLLGLLTSFTSAHQFATGTPLQLPRPPTLANYADIADAG-FRRAAVVTALMTA 78
           A++ L P L  L T+F   H  A  T   L  P TL N+ +   A  F R  + T L+  
Sbjct: 24  ALLWLLPLLYALWTAF---HPAAFATRFTLDAPLTLQNFVNAWQAAPFPRYFLNTFLLVT 80

Query: 79  VILLGQLTFSVLAAYAFARLQFRGRDALFWVYVATLMVPGTVTVVPLYLMMAQLGLRNTF 138
           +IL  QL  + LAAYAFAR  FRG + +F + +  LMV   + +V  Y  M  LGLR+T 
Sbjct: 81  MILAAQLVLATLAAYAFARFTFRGSNVMFMLVLLQLMVMPDILIVENYQTMNLLGLRDTI 140

Query: 139 WALVLPFMFGSPYAIFLLREHFRLIPDDLINAARLDGANTLDVIVHVVIPSSRPVLAALA 198
            ++ LP+ F S + IFLLR+ F+ +P +L  AA ++GA+   +++ V +P +RP+  A  
Sbjct: 141 LSIGLPY-FASAFGIFLLRQTFKTVPRELDEAATVEGASAWQILMQVYVPLARPIYIAFG 199

Query: 199 MITVVSQWNNFMWPLVITSGHKWRVLTVATADLQSRFNDQ---WTLVMAATTVAIVPLIA 255
           +++V + WNNF+WPL++T+  + R LTV      S   DQ   W+++ AAT +   PL+ 
Sbjct: 200 LVSVSTHWNNFLWPLIVTNSVESRPLTVGLQVFSS--TDQGVDWSIITAATLMTSAPLLL 257

Query: 256 LFVTFQRHIVASIVVSGLK 274
            F+ FQR  V S + +G++
Sbjct: 258 AFLLFQRQFVQSFMRAGIR 276