Pairwise Alignments

Query, 274 a.a., Probable sugar-transport integral membrane protein ABC transporter UspB from Mycobacterium tuberculosis H37Rv

Subject, 283 a.a., sugar ABC transporter permease from Herbaspirillum seropedicae SmR1

 Score =  132 bits (333), Expect = 6e-36
 Identities = 83/270 (30%), Positives = 134/270 (49%), Gaps = 4/270 (1%)

Query: 9   NTAVY-AVLTIGAVITLSPFLLGLLTSFTSAHQFATGTPLQLPRP-PTLANYADIADAG- 65
           N A+Y A L +  +I L P L  L+TS  S  +   G     P+    L NY +   A  
Sbjct: 13  NRALYRASLPVALLIWLLPMLAALVTSIRSNDELMAGNYWGWPQDFAMLENYREALTASP 72

Query: 66  FRRAAVVTALMTAVILLGQLTFSVLAAYAFARLQFRGRDALFWVYVATLMVPGTVTVVPL 125
                  + L+T   ++G ++ + +A +A +  QFRG   LF  +VA   VP  + ++P+
Sbjct: 73  MLHYFWNSCLITIPSVIGAISLAAMAGFALSTYQFRGNTVLFATFVACNFVPQQILMIPV 132

Query: 126 YLMMAQLGLRNTFWALVL-PFMFGSPYAIFLLREHFRLIPDDLINAARLDGANTLDVIVH 184
             +   LGL NT   ++L      + +    LR   + +P ++I AAR++GA+   V   
Sbjct: 133 RDLSLSLGLFNTITGMMLFHIAMQTGFCTLFLRNFIKQLPFEMIEAARIEGASEWTVFYR 192

Query: 185 VVIPSSRPVLAALAMITVVSQWNNFMWPLVITSGHKWRVLTVATADLQSRFNDQWTLVMA 244
           +V+P  RP LAALA++     WN++ W LV+T G     +TV  A L+ ++   W LV A
Sbjct: 193 IVLPLIRPALAALAVLVFTFVWNDYFWALVLTQGDDVAPITVGVAALRGQWTTAWNLVSA 252

Query: 245 ATTVAIVPLIALFVTFQRHIVASIVVSGLK 274
            + +A +P + LF   Q+  VA +     K
Sbjct: 253 GSILAALPSVILFFVMQKQFVAGLTFGASK 282