Pairwise Alignments

Query, 486 a.a., Probable UDP-N-acetylmuramoylalanine-D-glutamate ligase MurD from Mycobacterium tuberculosis H37Rv

Subject, 477 a.a., UDP-N-acetylmuramoylalanine-D-glutamate ligase (NCBI) from Rhodospirillum rubrum S1H

 Score =  164 bits (415), Expect = 6e-45
 Identities = 154/492 (31%), Positives = 219/492 (44%), Gaps = 60/492 (12%)

Query: 8   GAPVLVAGGRVTGQAVAAVLTRFGATPTVCDDDPVMLRPHAERGLPTVSSSDAVQQITGY 67
           G  + + G   +G A A  L   G      DD P++        +P    +D   + + +
Sbjct: 12  GQDLGIMGLGKSGMATARALAGTGTRVHAWDDSPILRDAARAESVPLCDLTDQTSRTSPW 71

Query: 68  AL---VVASPG----FSPATPLLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRSWLVVTG 120
                VV SPG    F    P+   A   GVP++ D++L  R     C+     +L +TG
Sbjct: 72  PALQGVVWSPGIPHTFPQPHPVAVIAHERGVPLFCDIDLLARA-RQDCF-----FLGITG 125

Query: 121 TNGKTTTTSMLHAMLIAGGRRAVLCGNIGSAVLDVLDEPAE-LLAVELSSFQLHWAPSLR 179
           TNGK+TTT+++  +L A      + GN+G+  L     P      +ELSS+QL   PSL 
Sbjct: 126 TNGKSTTTALIGHILKAARHPVQVGGNLGTPALSFEPLPFHGTYVLELSSYQLELVPSLC 185

Query: 180 PEAGAVLNIAEDHLDWHATMAEYTAAKARVLT----GGVAVAGLDDSRAAALLDGSPAQV 235
            +   +LNI  DHL  H  M  Y AAK ++       GVAV  +DD  + A+ D    + 
Sbjct: 186 CDVAVLLNITPDHLARHGGMDGYIAAKRQIFRCGPRPGVAVVCIDDEPSLAIHDALCREN 245

Query: 236 RVGFRLGEPAAREL-----GVRDAHLVDRAFSDDLTLLPVASIP-VPGPVGVLDALAAAA 289
             G ++   + R L     G  D  LVD        +  + +I  +PG     +A AA A
Sbjct: 246 --GRKVVAVSTRALPRGGVGAVDGQLVDATQGRPRAVADLTTIATLPGAHNWQNAAAAYA 303

Query: 290 LARSVGVPAGAIADAVTSFRVGRHRAEVVAVADGITYVDDSKATNPHAARASVLAYPRVV 349
             R  G+ A  I +A+ SF    HR E+VA  DG+ +++DSKATN  AA  ++  Y  V 
Sbjct: 304 ACRQHGIDAKIIVEAMASFPGLPHRQELVAEIDGVRFINDSKATNADAADKALRCYDTVY 363

Query: 350 WIAGGLLKGASLHAEVAAMASRLVGAVLIGRDRAAVAEALSRHAPDVPVVQVVAGEDTGM 409
           WIAGG  K   +   +     R+  A LIG+   A    L      VP+ QV        
Sbjct: 364 WIAGGQPKEGGI-VSLEPHFHRMRQAYLIGQAAPAFERTLK---GKVPLSQV-------- 411

Query: 410 PATVEVPVACVLDVAKDDKAGETVGAAVMTAAVAAARRMAQPGDTVLLAPAGASFDQFTG 469
                                 T+  AV T A  AA R A PG  VLL+PA AS+DQF+ 
Sbjct: 412 ---------------------GTLTRAV-TEAAKAAWRDAIPGAVVLLSPACASWDQFSS 449

Query: 470 YADRGEAFATAV 481
           +  RG+ F   V
Sbjct: 450 FEHRGDIFRELV 461