Pairwise Alignments

Query, 904 a.a., Probable DNA polymerase I PolA from Mycobacterium tuberculosis H37Rv

Subject, 927 a.a., DNA polymerase I (EC 2.7.7.7) from Xanthomonas campestris pv. campestris strain 8004

 Score =  521 bits (1342), Expect = e-152
 Identities = 349/938 (37%), Positives = 499/938 (53%), Gaps = 67/938 (7%)

Query: 17  LMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLLRDEAPTHIAAAFDVSR 76
           L+L+DG+S  +RAF+ALP        G  T A++G   ML   L+ E P ++A   D   
Sbjct: 4   LVLIDGSSYLYRAFHALPP--LTNAQGEPTGALFGVVNMLRATLK-ERPAYVAFVVDAPG 60

Query: 77  QTFRLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVLSEPGFEADDLIATLATQAE 136
           +TFR   Y +YKANR S PD+   Q+    +++ ALGI +L   G EADD+I TLA Q  
Sbjct: 61  KTFRDDLYADYKANRPSMPDDLRAQVQPMCDIVHALGIDILRIDGVEADDVIGTLALQGA 120

Query: 137 NEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFTPEAVVEKYGLTPRQYPDFAAL 196
           ++G  V + TGD+D  QLV   V ++    G S +   + EAV+ K+G+ P Q  D  AL
Sbjct: 121 SDGLAVTISTGDKDFAQLVRPGVELVNTMSG-SRMD--SDEAVIAKFGVRPNQIVDLLAL 177

Query: 197 RGDPSDNLPGIPGVGEKTAAKWIAEYGSLRSLVDNVDAVRGKVGDALRANLASVVRNREL 256
            GD  DN+PG+   G KTAAKW+AEY SL  ++ N D ++GK+G+ LRA L  +  NREL
Sbjct: 178 MGDTVDNVPGVEKCGPKTAAKWLAEYDSLDGVIANADKIKGKIGENLRAALPRLPLNREL 237

Query: 257 TDLVRDVPLAQTPDTLRLQPWDRDHIHRLFDDLEFRVLRDRLFDTLAAAGG--------- 307
             +  DV LA  P  L L+  + + +  L+    F      L    A AGG         
Sbjct: 238 VTIKTDVVLASGPRALDLREPNAEALAVLYARYGFTQALRELGGAAAEAGGLTAPMAVAR 297

Query: 308 -------------------PEVDEGFDVRGG---ALAPGTVRQWLAEHAGDGRRAGLTVV 345
                               E+D      G     L    +  W+A     G+ A  T  
Sbjct: 298 TEPGRARGTGFVSAPAAAPVELDPALSAPGQYETILTQAQLDSWIARLRAAGQFAFDTET 357

Query: 346 GTHLPHGGDATAMAVAAADGEGAYLDTATLTPDDDAAL---------AAWLADPAKPKAL 396
            +      +   ++VAA  G+ AYL      P   A L         A  L DPA  K  
Sbjct: 358 DSLDALQANLIGLSVAAEPGQAAYLPFGHDFPGAPAQLDRTQALAQLAPLLTDPAVRKLG 417

Query: 397 HEAKAAVHDLAGRGWTLEGVTSDTALAAYLVRPGQRSFTLDDLSLRYLRREL-------- 448
              K  +H +   G  L G   DT L ++++  G     +D L+ RYL  +         
Sbjct: 418 QHGKYDLHVMRRHGIALAGYADDTLLESFVLNSGSARHDMDSLAKRYLGYDTVKYEDICG 477

Query: 449 -RAETPQQQQLSLLDDDDTDAETIQTTILRARAVIDLADALDAELARIDSTALLGEMELP 507
             A+  +  Q+SL D     AE    T LR   V+    A +  L  +       ++E+P
Sbjct: 478 KGAKQIKFAQVSLEDATRYAAEDADIT-LRLHQVLGKRLAAEPALESV-----YRDIEMP 531

Query: 508 VQRVLAKMESAGIAVDLPMLTELQSQFGDQIRDAAEAAYGVIGKQINLGSPKQLQVVLFD 567
           +  VL ++E+ G+ VD   L    +    ++  A + A  + G+  NL SPKQLQ +LFD
Sbjct: 532 LVGVLERIEANGVCVDAAELRRQSADLSKRMLAAQQKATELAGRTFNLDSPKQLQALLFD 591

Query: 568 ELGMPKTKRTKTGY-TTDADALQSLFDKTGHPFLQHLLAHRDVTRLKVTVDGLLQAVA-- 624
           EL +P   +T  G  +T+ +AL+++ D+  H   + +L +R + +L+ T    L  +   
Sbjct: 592 ELKLPAVVKTPKGQPSTNEEALEAIADQ--HELPRVILDYRSLAKLRSTYTDKLPEMIHP 649

Query: 625 ADGRIHTTFNQTIAATGRLSSTEPNLQNIPIRTDAGRRIRDAFVVGDGYAELMTADYSQI 684
             GR+HT+++Q  AATGRLSS++PNLQNIPIRT+ GRRIR AFV   G  +L+  DYSQI
Sbjct: 650 QSGRVHTSYHQAGAATGRLSSSDPNLQNIPIRTEDGRRIRRAFVAPAG-RKLIACDYSQI 708

Query: 685 EMRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLS 744
           E+RIMAHLSGD GL+ AF +G D+H   A+  FG  ID V+G+ RR  KA+++GL YG+S
Sbjct: 709 ELRIMAHLSGDPGLVGAFESGADVHRATAAEVFGRTIDTVSGDERRAAKAINFGLMYGMS 768

Query: 745 AYGLSQQLKISTEEANEQMDAYFARFGGVRDYLRAVVERARKDGYTSTVLGRRRYLPELD 804
           A+GL++QL I   EA + +  YF+R+ GVRD++    ++AR  GY  TV GRR YL  ++
Sbjct: 769 AFGLARQLGIGRGEAQDYIALYFSRYPGVRDFMETTRQQARDKGYVETVFGRRLYLDFIN 828

Query: 805 SSNRQVREAAERAALNAPIQGSAADIIKVAMIQVDKALNEAQLASRMLLQVHDELLFEIA 864
           + ++  R  AERAA+NAP+QG+AADIIK AM+ VD  + +    + M+LQVHDEL+FE  
Sbjct: 829 AGSQGQRAGAERAAINAPMQGTAADIIKRAMVSVDGWIADHAQRALMILQVHDELVFEAD 888

Query: 865 PGERERVEALVRDKMGGAYPLDVPLEVSVGYGRSWDAA 902
               + + A V  +M  A  L VPL V  G G +WD A
Sbjct: 889 ADFVDTLLAEVTARMSAAASLRVPLVVDSGVGDNWDEA 926