Pairwise Alignments

Query, 904 a.a., Probable DNA polymerase I PolA from Mycobacterium tuberculosis H37Rv

Subject, 1025 a.a., DNA polymerase I from Rhodopseudomonas palustris CGA009

 Score =  330 bits (847), Expect = 2e-94
 Identities = 218/554 (39%), Positives = 311/554 (56%), Gaps = 20/554 (3%)

Query: 365  GEGAYLDTATLTPDD----DA--ALAAWLADPAKPKALHEAKAAVHDLAGRGWTLEGVTS 418
            G+G  L  A L PD     DA  AL   L      K     K A   LA  G TL  +  
Sbjct: 475  GDGDGLFAAGLAPDQIGPRDALDALKPILESAGVAKVGFAIKFAAVLLAQHGLTLRNI-D 533

Query: 419  DTALAAYLVRPGQRSFTLDDLS---LRYLRRELRAETPQQQQLSLLDDDDTDAETIQTTI 475
            D  L +Y +  G+ S  LD LS   L +    L   T   +     D    D  T     
Sbjct: 534  DPQLMSYALDAGRGSHALDALSESNLGHTLHTLTELTGTGKNKIGFDQVPVDRATAYAAE 593

Query: 476  LRARAVIDLADALDAELARIDSTALLGEMELPVQRVLAKMESAGIAVDLPMLTELQSQFG 535
             RA   + LA  L   L     TA+   +E P+  VLA+ME  GI++D  +L+ L + F 
Sbjct: 594  -RADVSLRLARVLKPRLVAGSMTAVYETLERPLVGVLARMERRGISIDRQVLSRLSADFA 652

Query: 536  DQIRDAAEAAYGVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTG-YTTDADALQSLFDK 594
                        + G+ IN+GSPKQL  +LF ++G+P   +TKTG ++T A  L  L ++
Sbjct: 653  QTAARIEAEIRELAGEDINIGSPKQLGDILFGKMGLPGGSKTKTGAWSTSAQVLDELAEQ 712

Query: 595  TGHPFLQHLLAHRDVTRLKVT-VDGLLQAVAADG-RIHTTFNQTIAATGRLSSTEPNLQN 652
             GH F + +L  R V++L+ T  D L   V     R+HTT+      TGRLSS EPNLQN
Sbjct: 713  -GHEFPRKILDWRQVSKLRSTYTDALPNYVHPQTHRVHTTYALAATTTGRLSSNEPNLQN 771

Query: 653  IPIRTDAGRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDEGLIEAFNTGEDLHSFV 712
            IP+RT+ GR+IR AFV   G  +L++ADYSQIE+R+++ ++    L +AF  G D+H+  
Sbjct: 772  IPVRTEDGRKIRRAFVATPGN-KLVSADYSQIELRLLSEVADVPALRKAFQDGIDIHAMT 830

Query: 713  ASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEANEQMDAYFARFGG 772
            AS  FGVP++ +  E+RRR KA+++G+ YG+SA+GL+ QL I  EEA   +  YF RF G
Sbjct: 831  ASEMFGVPVEGMPSEIRRRAKAINFGIIYGISAFGLANQLSIPREEAGAYIKRYFERFPG 890

Query: 773  VRDYLRAVVERARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNAPIQGSAADIIK 832
            +R Y+    +  R  GY +T+ GR+ + P++ +SN  +R   ERAA+NA +QGSAADII+
Sbjct: 891  IRAYMDETRDFCRNHGYVTTLFGRKCHYPDIKASNPSIRAFNERAAINARLQGSAADIIR 950

Query: 833  VAMIQVDKALNEAQLASRMLLQVHDELLFEIAPGERER----VEALVRDKMGGAYPLDVP 888
             AM++++ AL E +L+++MLLQVHDEL+FE+   E E     V A+++D    A  L+VP
Sbjct: 951  RAMVRMEDALAEKKLSAQMLLQVHDELIFEVPEAEVEATLPVVRAVMQDAPFPAVILNVP 1010

Query: 889  LEVSVGYGRSWDAA 902
            L+V      +WD A
Sbjct: 1011 LQVDARAADNWDEA 1024



 Score =  172 bits (436), Expect = 1e-46
 Identities = 111/289 (38%), Positives = 154/289 (53%), Gaps = 10/289 (3%)

Query: 17  LMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLLRD----EAPTHIAAAF 72
           + L+DG+S  FRA++ALP  N K+  GL  NAV GF  ML  LLRD      PTH+A  F
Sbjct: 34  IFLVDGSSYIFRAYHALPPLNRKS-DGLQVNAVLGFCNMLWKLLRDMPPENRPTHLAIIF 92

Query: 73  DVSRQTFRLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVLSEPGFEADDLIATLA 132
           D S  TFR   YPEYKA+R   P++   Q  + +E + A  +  L + GFEADDLIAT  
Sbjct: 93  DKSEVTFRNHLYPEYKAHRPPAPEDLIPQFALIREAVRAFDLPCLEQSGFEADDLIATYV 152

Query: 133 TQAENEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFTPEAVVEKYGLTPRQYPD 192
            +A   G    +V+ D+D +QLV+D V +    K      R     V+EK+G+ P +  +
Sbjct: 153 REACEAGATATIVSSDKDLMQLVTDCVVMYDTMKD----RRIGVPEVIEKFGVPPNKVVE 208

Query: 193 FAALRGDPSDNLPGIPGVGEKTAAKWIAEYGSLRSLVDNVDAVR-GKVGDALRANLASVV 251
             AL GD  DN+PG+PG+G KTAA+ I EYG L +L+     ++  K  +AL  N     
Sbjct: 209 VQALAGDSVDNVPGVPGIGIKTAAQLINEYGDLETLLARAPEIKQPKRREALIENAEKAR 268

Query: 252 RNRELTDLVRDVPLAQTPDTLRLQPWDRDHIHRLFDDLEFRVLRDRLFD 300
            +R+L  L   V L    + L +   D   +      +EF  L  R+ D
Sbjct: 269 ISRKLVLLDDHVQLEVPLEELAVHEPDARKLVAFLKAMEFTTLTRRVAD 317