Pairwise Alignments

Query, 904 a.a., Probable DNA polymerase I PolA from Mycobacterium tuberculosis H37Rv

Subject, 935 a.a., DNA polymerase I from Pedobacter sp. GW460-11-11-14-LB5

 Score =  519 bits (1336), Expect = e-151
 Identities = 339/942 (35%), Positives = 509/942 (54%), Gaps = 68/942 (7%)

Query: 17  LMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLLRDEAPTHIAAAFDVSR 76
           L LLDG +L +RA +AL      T  G+ T+AV GFT  L+++L+ E PTHIA  FD   
Sbjct: 5   LFLLDGMALMYRAHFALSKNPRFTSTGINTSAVMGFTNTLLDVLKKEKPTHIAVVFDTEA 64

Query: 77  QTFRLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVLSEPGFEADDLIATLATQAE 136
            T R   +  YKA R + P++ A  +    +++    I V++  G+EADD+I TLA +AE
Sbjct: 65  PTERHTTFEAYKAQRQAMPEDLAAAMPYVIKLITGFNIPVITSDGYEADDIIGTLAKKAE 124

Query: 137 NEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFTPEAVVEKYGL-TPRQYPDFAA 195
            +GY+V  +T D+D  QLVS+++ +  P +  +++     + ++ K+ +    Q  D   
Sbjct: 125 LKGYQVYCMTPDKDFAQLVSENIFIYKPARMGNDMEILGVKEILAKWEIENVLQVIDILG 184

Query: 196 LRGDPSDNLPGIPGVGEKTAAKWIAEYGSLRSLVDNVDAVRGKVGDALRANLASVVRNRE 255
           L GD  DN+PGIPG+GEKTA   I +YGS+ +++ N   ++GK  + +       + +++
Sbjct: 185 LWGDAVDNIPGIPGIGEKTAKALIKQYGSMENIIANSHELKGKQRENVENFAEQGLISKK 244

Query: 256 LTDLVRDVPLAQTPDTLRLQPWDRDHIHRLFDDLEFRVLRDRLFDTLAAAGGPEVDEGF- 314
           L  ++ DVP+     +L L    RD +  LF +LEFR L  R+F    +       EG  
Sbjct: 245 LATILLDVPVELDEASLELCDPSRDLLEPLFTELEFRTLGRRVFGDEFSVTTARFQEGTQ 304

Query: 315 -DVRGGALAPGTVRQWLAEHAGDGRRAGLTVVGTHLPHGGDATAMAVAAAD-------GE 366
            D+ G             E     +    T+  T   H       A   AD        +
Sbjct: 305 TDLFGNQTGEAIQYTNTLEEEPAEKLPAKTIENTE--HDYQLVDTAEQRADLIKLLLAEK 362

Query: 367 GAYLDTATLTPDDDAALAAWLADPAKP---------KALHEAKAAVHD------------ 405
               DT T   D + A    L+   KP          A  EA+  V +            
Sbjct: 363 RISFDTETTGTDANMADLVGLSFSIKPGKGYYIPVPAAREEAQVIVDEFKVVLENEEIEK 422

Query: 406 -----------LAGRGWTLEGVTSDTALAAYLVRPGQRSFTLDDLSLRYL-------RRE 447
                      L   G  ++G   DT LA YL+ P  R   +D LS  YL        + 
Sbjct: 423 IGQNTKYDILVLKWYGVEVKGKLFDTMLAHYLIDPDTRH-GMDVLSENYLGYSPISITKL 481

Query: 448 LRAETPQQ---QQLSLLDDDDTDAETIQTTILRARAVIDLADALDAELARIDSTALLGEM 504
           + A+   Q   + + ++D  D  AE    T+        LA   + +L  +++  L  E+
Sbjct: 482 IGAKGKNQGTMRDVPVIDVVDYAAEDADVTL-------QLAHIFEPKLKELNAAKLAEEI 534

Query: 505 ELPVQRVLAKMESAGIAVDLPMLTELQSQFGDQIRDAAEAAYGVIGKQINLGSPKQLQVV 564
           E P+  VLA +E  G+ +D+  L     +   +I    +  Y   G + NL SPKQL  V
Sbjct: 535 ENPLVYVLADIEKEGVRIDIETLKAYSKELETEIIKFEQNVYDKAGIKFNLASPKQLGEV 594

Query: 565 LFDELGM-PKTKRTKTG-YTTDADALQSLFDKTGHPFLQHLLAHRDVTRLKVT-VDGL-L 620
           LFD+L + PK K+TKTG Y T  D L +L  K+    +Q +L  R + +LK T VD L L
Sbjct: 595 LFDKLQLDPKAKKTKTGQYQTGEDVLLALASKSD--IVQDILDFRQLQKLKSTYVDALPL 652

Query: 621 QAVAADGRIHTTFNQTIAATGRLSSTEPNLQNIPIRTDAGRRIRDAFVVGDGYAELMTAD 680
                 GR+HT++NQ +AATGRLSS  PNLQNIPIRT+ GR +R AF+  D    L++AD
Sbjct: 653 MVNPKTGRVHTSYNQAVAATGRLSSNNPNLQNIPIRTERGREVRKAFIARDENHILLSAD 712

Query: 681 YSQIEMRIMAHLSGDEGLIEAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLA 740
           YSQIE+RI+A +S +E +++AFN G D+H+  A++ +GV I+EV G  RR  KA+++G+ 
Sbjct: 713 YSQIELRIIAEISKEENMLDAFNKGIDIHTATAAKVYGVSIEEVDGTQRRNAKAVNFGII 772

Query: 741 YGLSAYGLSQQLKISTEEANEQMDAYFARFGGVRDYLRAVVERARKDGYTSTVLGRRRYL 800
           YG SA+GLSQ L I  +EA E ++ YFA++ G++ Y+   +  AR++G+  T++GRRRYL
Sbjct: 773 YGQSAFGLSQNLGIPRKEAAEIIEQYFAQYPGIKRYMSDTMNFARENGFVETIMGRRRYL 832

Query: 801 PELDSSNRQVREAAERAALNAPIQGSAADIIKVAMIQVDKALNEAQLASRMLLQVHDELL 860
            +++S+N+ VR  AER A+NAPIQGSAAD+IK+AMI + K +    L S M +QVHDEL+
Sbjct: 833 RDINSANQTVRGFAERNAINAPIQGSAADMIKIAMINIHKEMKAQNLQSTMTMQVHDELV 892

Query: 861 FEIAPGERERVEALVRDKMGGAYPLDVPLEVSVGYGRSWDAA 902
           F++   E+E ++A+++DKM  A  L VP+ V +G G +W AA
Sbjct: 893 FDVLRSEKEAMKAIIQDKMANAIKLTVPIVVEIGEGDNWLAA 934