Pairwise Alignments

Query, 904 a.a., Probable DNA polymerase I PolA from Mycobacterium tuberculosis H37Rv

Subject, 930 a.a., DNA polymerase I (RefSeq) from Shewanella loihica PV-4

 Score =  515 bits (1327), Expect = e-150
 Identities = 339/922 (36%), Positives = 497/922 (53%), Gaps = 43/922 (4%)

Query: 13  AKPTLMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLLRDEAPTHIAAAF 72
           A+  L+L+DG+S  +RA+YA P  +     G  T AVYG   ML +LL    PT +A  F
Sbjct: 19  AENPLILVDGSSYLYRAYYAPP--HLTNSKGEATGAVYGVINMLRSLLNQYKPTQMAVVF 76

Query: 73  DVSRQTFRLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVLSEPGFEADDLIATLA 132
           D   +TFR + Y EYKA+R   PD+   QI+    ++ ALG+ ++  PG EADD+I T+A
Sbjct: 77  DAKGKTFRNEMYAEYKAHRPPMPDDLRTQIEPLHRIIRALGLPLVCIPGVEADDVIGTIA 136

Query: 133 TQAENEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFTPEAVVEKYGLTPRQYPD 192
            QA  EG  VL+ TGD+D  QLV D +T++         T   P+ V EK+G+ P    D
Sbjct: 137 RQASQEGRAVLISTGDKDMAQLVDDKITLINTMTN----TILGPDEVSEKFGVGPELIID 192

Query: 193 FAALRGDPSDNLPGIPGVGEKTAAKWIAEYGSLRSLVDNVDAV-----RG-KVGDALRAN 246
             AL+GD +DN+PG+PGVGEKTA   +   G + +++ N + +     RG K   A  A 
Sbjct: 193 LLALQGDKADNIPGLPGVGEKTALAMLQGVGGVEAILANPEKMPELGFRGAKTMPAKIAE 252

Query: 247 LASVVR-NRELTDLVRDVPLAQTPDTLRLQPWDRDHIHRLFDDLEFRVLRDRLFDTLAAA 305
              +++ + EL  +  DV L Q    L +Q  DRD + + + ++EF+     + D  ++A
Sbjct: 253 HGDMLKLSYELATIKCDVELEQDWHQLNIQGADRDELIKCYGEMEFKRWLAEVLDNKSSA 312

Query: 306 GGPE----------VDEGFDVRGGALAPGTVRQWLAEHAGDGRRAGLTVVGTHLPHGGDA 355
              E          +D  +D     L    + +WL   A     A  T   +        
Sbjct: 313 SSQEEADEVPAPQAIDTQYDT---ILTWEALDEWLKALAAAPLFALDTETTSLNYMEAKM 369

Query: 356 TAMAVAAADGEGAYLDTATLTPDDD---------AALAAWLADPAKPKALHEAKAAVHDL 406
             ++ A   G+ AYL  A    D           A L   L DP+  K     K  +  L
Sbjct: 370 VGLSFAIEPGKAAYLPLAHDYADAPEQLDSEQVLAKLKPLLEDPSLLKVGQNLKYDMSIL 429

Query: 407 AGRGWTLEGVTSDTALAAYLVRPGQRSFTLDDLSLRYL-RRELRAETPQQQQLSLLDDDD 465
           A  G  L+GV  DT L +Y+         +DDL+L+YL  + +  E    + +  L  + 
Sbjct: 430 ANVGIALKGVAFDTMLESYVFNSVASKHNMDDLALKYLGHKNISFEEIAGKGVKQLTFNQ 489

Query: 466 TDAETIQTTILR-ARAVIDLADALDAELARIDSTA-LLGEMELPVQRVLAKMESAGIAVD 523
              ET        A   + L   L   L +    A +  ++ELP+  +L+++E  G+ +D
Sbjct: 490 IPLETAAPYAAEDADITLRLHQHLWPRLQKASELASVFTDIELPLVSILSQIERQGVLID 549

Query: 524 LPMLTELQSQFGDQIRDAAEAAYGVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTGYTT 583
             +L +   +   +I +  + AY + G+  NLGS KQLQ + F++LG P  K+T  G  +
Sbjct: 550 SMLLGQQSDELARKIDELEQKAYEIAGEPFNLGSTKQLQALFFEKLGYPVLKKTPKGAPS 609

Query: 584 DADALQSLFDKTGHPFLQHLLAHRDVTRLKVTVDGLLQAVA--ADGRIHTTFNQTIAATG 641
            A+ +        +P  + +L HR +++LK T    L  +     GR+HT+++Q IAATG
Sbjct: 610 TAEEVLVEL-ALDYPLPKIILEHRSLSKLKSTYTDKLPLMVDGKTGRVHTSYHQAIAATG 668

Query: 642 RLSSTEPNLQNIPIRTDAGRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDEGLIEA 701
           RLSS+EPNLQNIPIRT+ GRRIR AFV  +G  +++ ADYSQIE+RIMAHLS D+GL+ A
Sbjct: 669 RLSSSEPNLQNIPIRTEEGRRIRHAFVAPEG-RKILAADYSQIELRIMAHLSQDKGLLSA 727

Query: 702 FNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEANE 761
           F  G+D+H   A+  F V   EVT E RRR KA+++GL YG+SA+GL++QL I   EA +
Sbjct: 728 FAEGKDIHRATAAEVFDVDFSEVTSEQRRRAKAVNFGLIYGMSAFGLARQLDIPRHEAQQ 787

Query: 762 QMDAYFARFGGVRDYLRAVVERARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAALNA 821
            +D YF R+ GV  Y+      A + GY ST+ GRR YLP +   N   R+AAERAA+NA
Sbjct: 788 YIDIYFKRYPGVLKYMEDTRAAAAEQGYVSTLYGRRLYLPAIKDRNAMRRQAAERAAINA 847

Query: 822 PIQGSAADIIKVAMIQVDKAL-NEAQLASRMLLQVHDELLFEIAPGERERVEALVRDKMG 880
           P+QG+AADIIK AMI + + +  E Q    M++QVHDEL+FE+   + + ++  V + M 
Sbjct: 848 PMQGTAADIIKKAMINIAQWIETETQGEITMIMQVHDELVFEVDADKADSLKLKVCELMA 907

Query: 881 GAYPLDVPLEVSVGYGRSWDAA 902
            A  LDV L    G G +W+ A
Sbjct: 908 QAASLDVELLAEAGIGDNWEQA 929