Pairwise Alignments

Query, 904 a.a., Probable DNA polymerase I PolA from Mycobacterium tuberculosis H37Rv

Subject, 908 a.a., DNA polymerase I from Dyella japonica UNC79MFTsu3.2

 Score =  550 bits (1418), Expect = e-160
 Identities = 357/923 (38%), Positives = 508/923 (55%), Gaps = 56/923 (6%)

Query: 17  LMLLDGNSLAFRAFYALPAENFKTRGGLTTNAVYGFTAMLINLLRDEAPTHIAAAFDVSR 76
           L+L+DG+S  +RAF+ALP        G  T A++G   ML + L+   P ++A   D   
Sbjct: 4   LILIDGSSYLYRAFHALPP--LTNAQGEPTGALFGVVNMLRSTLKAR-PEYVAFVSDAPG 60

Query: 77  QTFRLQRYPEYKANRSSTPDEFAGQIDITKEVLGALGITVLSEPGFEADDLIATLATQAE 136
            TFR   Y +YKANR   P +   Q++    ++ ALG  +L   G EADD+I TLA QA 
Sbjct: 61  PTFRDAMYDQYKANRPPMPQDLGAQVEPMLAIVSALGFPILRVTGVEADDVIGTLAVQAH 120

Query: 137 NEGYRVLVVTGDRDALQLVSDDVTVLYPRKGVSELTRFTPE--AVVEKYGLTPRQYPDFA 194
             G  V + TGD+D  QLV   VT+      V+ +T  T +   V+EK+G+ P Q  D+ 
Sbjct: 121 ARGIEVEISTGDKDLAQLVRPGVTL------VNTMTNTTMDDAGVMEKFGVRPEQIIDYL 174

Query: 195 ALRGDPSDNLPGIPGVGEKTAAKWIAEYGSLRSLVDNVDAVRGKVGDALRANLASVVRNR 254
            L GD  DN+PG+P  G KTAAKW+AEYGSL  ++ N D V GK+G++LRA L  +  +R
Sbjct: 175 TLVGDSVDNVPGVPKCGPKTAAKWLAEYGSLDGVIANADKVGGKIGESLRAALPQLPLSR 234

Query: 255 ELTDLVRDVPLAQTPDTLRLQPWDRDHIHRLFDDLEFRVLRDRLFDTLAAAGGPEVDEGF 314
           EL  +  DVPL Q  + L+L+  D D +  L+   EF+     L    +AA  P      
Sbjct: 235 ELVTVRLDVPLEQGVEALKLRERDADKLRELYTRYEFKAALKELEGGESAAAAPVPTAAP 294

Query: 315 DVRGGALA-----PGTVRQWLAEHAGDG-----RRAGLTVVGTHLPH----GGDATAMAV 360
            V     A     PG       E   D      R A L    T          D   +++
Sbjct: 295 AVAPAQPADDLSGPGRYELVATEAQLDAWVDKLRSAELIAFDTETTSIDAMRADIVGLSL 354

Query: 361 AAADGEGAYLDTATLTPDDDAALAAWLA---------DPAKPKALHEAKAAVHDLAGRGW 411
           A   GE  Y+  A   P   A L   L          DPA+PK    AK  ++ L+  G 
Sbjct: 355 AVETGEACYIPVAHDFPGAPAQLPRELVLAKLKPIFEDPARPKLGQHAKYDINMLSHYGI 414

Query: 412 TLEGVTSDTALAAYLVRPGQRSFTLDDLSLRYLR------RELRAETPQQQQLSLLDDDD 465
            L+G+  D+ L +Y+         +D L+ +YL        E+  +  +Q   S +D D 
Sbjct: 415 VLQGLKHDSMLESYVWNATATRHDMDSLARKYLGYETVKYEEVAGKGAKQISFSQVDLDT 474

Query: 466 T---DAETIQTTILRARAVIDLADALDAELARIDSTALLGEMELPVQRVLAKMESAGIAV 522
                AE    T+   RA+  L +     + R+ S  +  ++E+P+  VLA ME  G+ +
Sbjct: 475 ACRYAAEDADITLRLHRALWPLLE----HVPRLRS--VYEDIEIPLVPVLAGMEQRGVLI 528

Query: 523 DLPMLTELQSQFGDQIRDAAEAAYGVIGKQINLGSPKQLQVVLFDELGMPKTKRTKTGY- 581
           D+  L     Q G ++ +  + A+   G   +L SPKQLQ VLFDELG+P   RT TG  
Sbjct: 529 DVASLRLQSQQLGKRMLELQQQAWKTAGHDFSLDSPKQLQSVLFDELGLPAKLRTPTGQP 588

Query: 582 TTDADALQSLFDKTGHPFLQHLLAHRDVTRLKVTVDGLLQAVA--ADGRIHTTFNQTIAA 639
           +T+ +AL+++ D+  HP  + +L +R + +L+ T    L  +     GR+HT+++Q   A
Sbjct: 589 STNEEALEAIADE--HPLPRLILDYRGLAKLRSTYTEKLAEIVNPRTGRVHTSYHQGAVA 646

Query: 640 TGRLSSTEPNLQNIPIRTDAGRRIRDAFVVGDGYAELMTADYSQIEMRIMAHLSGDEGLI 699
           TGR+SS++PNLQNIP+RT+ GRRIR AF+   G+ ++M ADYSQIE+RIMAHLSGDEGL+
Sbjct: 647 TGRVSSSDPNLQNIPVRTEEGRRIRQAFIAPPGW-KVMAADYSQIELRIMAHLSGDEGLM 705

Query: 700 EAFNTGEDLHSFVASRAFGVPIDEVTGELRRRVKAMSYGLAYGLSAYGLSQQLKISTEEA 759
            AF  G D+H   A+  FG+  +EV+   RR  KA+++GL YG+SA+GL++QL +   EA
Sbjct: 706 RAFQEGGDVHRATAAEVFGLAPEEVSANQRRAAKAINFGLMYGMSAFGLARQLGVDRGEA 765

Query: 760 NEQMDAYFARFGGVRDYLRAVVERARKDGYTSTVLGRRRYLPELDSSNRQVREAAERAAL 819
           ++ M  YFAR+ GV  ++ A  E+A +DGY  T+ GRR YL  L + N+ +R  AERAA+
Sbjct: 766 SDYMARYFARYPGVHAFMDATREQAHRDGYVETIFGRRLYLENLTNRNQALRAGAERAAV 825

Query: 820 NAPIQGSAADIIKVAMIQVDKALNEAQLASRMLLQVHDELLFEIAPGERERVEALVRDKM 879
           NAP+QGSAADIIK AMI V  A  + +  + ML+QVHDEL+FE+     + V A V  +M
Sbjct: 826 NAPMQGSAADIIKRAMISV-AAWLKGRDDAHMLMQVHDELVFEVHEDAVDEVRAAVVARM 884

Query: 880 GGAYPLDVPLEVSVGYGRSWDAA 902
            GA  L VPL V  G G +WD A
Sbjct: 885 SGAAELRVPLLVEAGVGANWDEA 907