Pairwise Alignments

Query, 612 a.a., Probable oligopeptide-transport ATP-binding protein ABC transporter OppD from Mycobacterium tuberculosis H37Rv

Subject, 693 a.a., oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  385 bits (989), Expect = e-111
 Identities = 234/614 (38%), Positives = 355/614 (57%), Gaps = 15/614 (2%)

Query: 3   PLLEVTDLAVTFRTDGDPVTAVRGISYRVEPGEVVAMVGESGSGKSAAAMAVVGLLPEYA 62
           P+LE+ +L+++F T    + AV   S  V PGE + +VGESG GKS  A+ V+  L    
Sbjct: 8   PILEIENLSISFFTRLREIPAVMDFSCTVMPGEAMGLVGESGCGKSTVALGVMQDLGVNG 67

Query: 63  Q-VRGSVRLQGTELLGLADNAMSRFRGKAIGTVFQDPMSALTPVYTVGDQIAEAIEVHQP 121
           + V G+++ +G +L  ++   + R RGK I  ++Q+PM++L P   +G Q+ E   +H+ 
Sbjct: 68  RIVGGTIKFKGRDLNTMSPEELRRIRGKEIAMIYQEPMASLNPAMRIGKQLMEVPMIHEG 127

Query: 122 RVGKKAARRRAVELLDLVGISQPQRRSRAFPHELSGGERQRVVIAIAIANDPDLLICDEP 181
            V +  A +RA++++  V +  P+R   +FPH+LSGG++QR+VIA+A+  +P LLI DEP
Sbjct: 128 -VSEDVAYQRALDVVTDVRLPDPKRILNSFPHQLSGGQQQRIVIAMALMANPALLILDEP 186

Query: 182 TTALDVTVQAQILDVLKAARDVTGAGVLIITHDLGVVAEFADRALVMYAGRVVESAGVND 241
           TTALDVTV+A ++D++K      G  +L I+H+LG++ E  DR  VMY+G  VE+  + D
Sbjct: 187 TTALDVTVEAAVVDLVKDLGKKYGTSMLFISHNLGLILETCDRLCVMYSGEAVETGSIED 246

Query: 242 LYRDRRMPYTVGLLGSVPRLDAAQGTR-LVPIPGAPPSLAGLAPGCPFAPRCPLVIDE-C 299
           ++ + + PYT  L  S+P   A +  R LV IPG  P       GC F P C       C
Sbjct: 247 VFDEMQHPYTQALFRSIPLPGADKNARPLVAIPGNFPLPHERPKGCNFGPHCDYFQPGLC 306

Query: 300 LTAEPELLDVATD--HRAACIRTELVTGRSAADIYRVKTEARPAALGDASVVVRVRHLVK 357
              +  +  +  D  H + C+R E +   +  +      +  P       VV+ + +L K
Sbjct: 307 DAQDIRMRKIPGDDRHGSRCLRFEEIDWNAPVEKADQTEKPEPGR-----VVLNMDNLKK 361

Query: 358 TYRLAKGVVLRRAIGEV-RAVDGISLELRQGRTLGIVGESGSGKSTTLHEILELAAPQSG 416
            Y +A   +      +V +A + +S E R+G TL IVGESG GKST    ++ L     G
Sbjct: 362 YYEVAASALFGGKNKKVVKANEDLSFEAREGETLAIVGESGCGKSTFAKVLMGLETATDG 421

Query: 417 SIEVLGTDVATLGTAERRSLR-RDIQVVFQDPVASLDPRLPVFDLIAEPLQANGFGKNET 475
           +I +   ++  +   +R +    D+Q+VFQ+P  +L+P + V   I   L+  G G  E 
Sbjct: 422 TILLDNREIQDIEIQDRDTKTVADVQMVFQNPFDTLNPSMTVGRQIIRALEIFGVGDTED 481

Query: 476 --HARVAELLDIVGLRHGDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSALDVS 533
               R+ ELLD+V L    A+R P + SGGQKQR+GIARA A   +I+  DEPVSALDVS
Sbjct: 482 ARKQRMLELLDLVKLPRAFANRMPRQLSGGQKQRVGIARAFAGDARIVVADEPVSALDVS 541

Query: 534 IQAGIINLLLDLQEQFGLSYLFVSHDLSVVKHLAHQVAVMLAGTVVEQGDSEEVFGNPKH 593
           +QA + +LL+++Q Q   + LF+SHDLS+V++L+ +V VM  G VVE G ++EVF  P H
Sbjct: 542 VQAAVTDLLMEIQRQNQTTLLFISHDLSIVRYLSDRVMVMYLGHVVELGTTDEVFSPPYH 601

Query: 594 EYTRRLLGAVPQPD 607
            YT  LL AVP  D
Sbjct: 602 PYTEALLSAVPIAD 615



 Score =  170 bits (430), Expect = 2e-46
 Identities = 107/305 (35%), Positives = 156/305 (51%), Gaps = 9/305 (2%)

Query: 21  VTAVRGISYRVEPGEVVAMVGESGSGKSAAAMAVVGLLPEYAQVRGSVRLQGTELLGLAD 80
           V A   +S+    GE +A+VGESG GKS  A  ++GL        G++ L   E+  +  
Sbjct: 379 VKANEDLSFEAREGETLAIVGESGCGKSTFAKVLMGL---ETATDGTILLDNREIQDIEI 435

Query: 81  NAMSRFRGKAIGTVFQDPMSALTPVYTVGDQIAEAIEVHQPRVGKKAARRRAVELLDLVG 140
                     +  VFQ+P   L P  TVG QI  A+E+      + A ++R +ELLDLV 
Sbjct: 436 QDRDTKTVADVQMVFQNPFDTLNPSMTVGRQIIRALEIFGVGDTEDARKQRMLELLDLVK 495

Query: 141 ISQPQRRSRAFPHELSGGERQRVVIAIAIANDPDLLICDEPTTALDVTVQAQILDVLKAA 200
           +  P+  +   P +LSGG++QRV IA A A D  +++ DEP +ALDV+VQA + D+L   
Sbjct: 496 L--PRAFANRMPRQLSGGQKQRVGIARAFAGDARIVVADEPVSALDVSVQAAVTDLLMEI 553

Query: 201 RDVTGAGVLIITHDLGVVAEFADRALVMYAGRVVESAGVNDLYRDRRMPYTVGLLGSVPR 260
           +      +L I+HDL +V   +DR +VMY G VVE    ++++     PYT  LL +VP 
Sbjct: 554 QRQNQTTLLFISHDLSIVRYLSDRVMVMYLGHVVELGTTDEVFSPPYHPYTEALLSAVPI 613

Query: 261 LDAAQGTRLVPIPGAPPSLAGLAPGCPFAPRC----PLVIDECLTAEPELLDVATDHRAA 316
            D +     + + G  PS     PGCPF  RC     +  + C T  P      T H+  
Sbjct: 614 ADTSIQKERIVLDGDIPSAMNPPPGCPFQTRCRWKSEVPGNLCETQVPPQRKTPTGHQIK 673

Query: 317 CIRTE 321
           C  +E
Sbjct: 674 CHLSE 678