Pairwise Alignments

Query, 612 a.a., Probable oligopeptide-transport ATP-binding protein ABC transporter OppD from Mycobacterium tuberculosis H37Rv

Subject, 727 a.a., ABC transporter ATP-binding protein from Burkholderia phytofirmans PsJN

 Score =  393 bits (1010), Expect = e-113
 Identities = 246/617 (39%), Positives = 346/617 (56%), Gaps = 30/617 (4%)

Query: 5   LEVTDLAVTFRTDGDPVTAVRGISYRVEPGEVVAMVGESGSGKSAAAMAVVGLLPEYAQV 64
           L V  L VT+R  G     ++ IS+RV  GE   +VGESG GKS  AMA +  LP   +V
Sbjct: 23  LTVVGLTVTYRIRGRDREVLQDISFRVRRGEAYGLVGESGCGKSTVAMAALRYLPRNGKV 82

Query: 65  R-GSVRLQGTELLGLADNAMSRFRGKAIGTVFQDPMSALTPVYTVGDQIAEAIEVHQPRV 123
           + G + + G ++  L  +A+   R  AI  V+QDP  AL P  T+  Q++EA E     V
Sbjct: 83  KAGKIIIAGEDVQKLNADALRNMRANAISMVYQDPGRALNPSLTIARQVSEAFEA--AGV 140

Query: 124 GKKAARRRAVELLDLVGISQPQRRSRAFPHELSGGERQRVVIAIAIANDPDLLICDEPTT 183
            +  A RR +E+L  V I+ P+R   ++PH+LSGG +QRVVIA+A+A++P LLI DEPTT
Sbjct: 141 ARDEALRRTLEMLQRVRIAAPERVMESYPHQLSGGMQQRVVIAMALASNPALLILDEPTT 200

Query: 184 ALDVTVQAQILDVLKAARDVTGAGVLIITHDLGVVAEFADRALVMYAGRVVESAGVNDLY 243
            LD TV+A++LD++   R   G  VL I+H+L V+    +R  V+YAG++VE     D++
Sbjct: 201 GLDATVEAEVLDLVAQLRKELGTAVLFISHNLAVIGRMCERVGVLYAGKLVEEGATQDVF 260

Query: 244 RDRRMPYTVGLLGSVPRLDAAQGT-RLVPIPGAPPSLAGLAPGCPFAPRCPLVIDECLTA 302
              R PYTVGLL  +P    ++ + RL  I G+ PS   +  GC +A RC L  D C   
Sbjct: 261 TRPRHPYTVGLLRCLPTTGRSKDSERLDTIAGSLPSPGSVTQGCIYADRCRLADDRCRRE 320

Query: 303 EPELLDVAT---DHRAACIRTELVTGRSAADIYRVKTEARPAALGDASV-------VVRV 352
            P    V+    D  + C   E      A D+ R   EA P    DA V       V+R 
Sbjct: 321 APPPYRVSAARGDQMSRCHYHE-----RAIDLPRASAEALPER-SDAPVDGKPPALVLRA 374

Query: 353 RHLVKTYRLAKGVVLRRAIGEVRAVDGISLELRQGRTLGIVGESGSGKSTTLHEILELAA 412
             L KT+ ++           +RAVD +S++L  G TLG+VGESGSGK+T    +L L  
Sbjct: 375 ERLSKTFHVSGAA--------LRAVDNVSIDLASGETLGLVGESGSGKTTLAKLMLGLLT 426

Query: 413 PQSGSI-EVLGTDVATLGTAERRSLRRDIQVVFQDPVASLDPRLPVFDLIAEPL-QANGF 470
           P +GS+ E+ G  +A   T       + +Q+VFQ+P ++L+    V  LI   L +    
Sbjct: 427 PDAGSVLELDGAPLAARVTRRNTEQVKSLQIVFQNPDSALNRAHSVKRLIGRALSRLTAL 486

Query: 471 GKNETHARVAELLDIVGLRHGDASRYPAEFSGGQKQRIGIARALALQPKILALDEPVSAL 530
                  R+A L D V L          + SGG KQR+ IARA A +P+++  DEP SAL
Sbjct: 487 RGPAIDERLAALTDAVRLPQRYLGSRTRQLSGGLKQRVAIARAFAGEPRVVVCDEPTSAL 546

Query: 531 DVSIQAGIINLLLDLQEQFGLSYLFVSHDLSVVKHLAHQVAVMLAGTVVEQGDSEEVFGN 590
           DVS+QA I+NLL DLQ + G+SY+F+SHDL VV++LA ++AV+  G ++E G +  VF  
Sbjct: 547 DVSVQAAILNLLADLQRERGVSYVFISHDLHVVRYLADRIAVLYLGRLLEIGPAAAVFEG 606

Query: 591 PKHEYTRRLLGAVPQPD 607
           P H YT  LL +VP  D
Sbjct: 607 PHHPYTEALLSSVPTLD 623



 Score =  164 bits (415), Expect = 1e-44
 Identities = 116/314 (36%), Positives = 159/314 (50%), Gaps = 9/314 (2%)

Query: 4   LLEVTDLAVTFRTDGDPVTAVRGISYRVEPGEVVAMVGESGSGKSAAAMAVVGLLPEYAQ 63
           +L    L+ TF   G  + AV  +S  +  GE + +VGESGSGK+  A  ++GLL   A 
Sbjct: 371 VLRAERLSKTFHVSGAALRAVDNVSIDLASGETLGLVGESGSGKTTLAKLMLGLLTPDA- 429

Query: 64  VRGSV-RLQGTELLGLADNAMSRFRGKAIGTVFQDPMSALTPVYTVGDQIAEAIEVHQPR 122
             GSV  L G  L        +  + K++  VFQ+P SAL   ++V   I  A+      
Sbjct: 430 --GSVLELDGAPLAARVTRRNTE-QVKSLQIVFQNPDSALNRAHSVKRLIGRALSRLTAL 486

Query: 123 VGKKAARRRAVELLDLVGISQPQRRSRAFPHELSGGERQRVVIAIAIANDPDLLICDEPT 182
            G  A   R   L D V +  PQR   +   +LSGG +QRV IA A A +P +++CDEPT
Sbjct: 487 RGP-AIDERLAALTDAVRL--PQRYLGSRTRQLSGGLKQRVAIARAFAGEPRVVVCDEPT 543

Query: 183 TALDVTVQAQILDVLKAARDVTGAGVLIITHDLGVVAEFADRALVMYAGRVVESAGVNDL 242
           +ALDV+VQA IL++L   +   G   + I+HDL VV   ADR  V+Y GR++E      +
Sbjct: 544 SALDVSVQAAILNLLADLQRERGVSYVFISHDLHVVRYLADRIAVLYLGRLLEIGPAAAV 603

Query: 243 YRDRRMPYTVGLLGSVPRLDAAQGTRLVPIPGAPPSLAGLAPGCPFAPRCPLVIDE-CLT 301
           +     PYT  LL SVP LD   G   + + G  PS A    GC F  RCP  +   C  
Sbjct: 604 FEGPHHPYTEALLSSVPTLDGQGGATRIHLSGDLPSAASPPSGCVFHTRCPRKLGAICEQ 663

Query: 302 AEPELLDVATDHRA 315
            +P  +D      A
Sbjct: 664 QDPPFVDAGEGEAA 677