Pairwise Alignments

Query, 563 a.a., Probable cold-shock DeaD-box protein A homolog DeaD (ATP-dependent RNA helicase dead homolog) from Mycobacterium tuberculosis H37Rv

Subject, 642 a.a., DEAD-box ATP-dependent RNA helicase CshA (EC 3.6.4.13) from Xanthomonas campestris pv. campestris strain 8004

 Score =  588 bits (1515), Expect = e-172
 Identities = 318/589 (53%), Positives = 402/589 (68%), Gaps = 54/589 (9%)

Query: 15  FADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLSK 74
           FADL +   V++A+  VGYE+P+ IQAATIPAL+AG DV+G AQTGTGKTAAFA+P+LS 
Sbjct: 11  FADLGLSDAVMKAVAAVGYETPSPIQAATIPALLAGRDVLGQAQTGTGKTAAFALPVLSN 70

Query: 75  IDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGAQ 134
            D+    PQALVL PTRELA+QVAEAF +Y   +    VLP+YGG  YA QL+ L+RG  
Sbjct: 71  ADLNQVKPQALVLAPTRELAIQVAEAFQKYAEAIPGFRVLPVYGGQPYAQQLSALKRGVH 130

Query: 135 VVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALFS 194
           VVVGTPGR+IDHL+R TLDLS++  LVLDEADEML MGF DDVE +L + PE +QVALFS
Sbjct: 131 VVVGTPGRVIDHLDRGTLDLSQLKTLVLDEADEMLRMGFIDDVEAVLKKLPEKRQVALFS 190

Query: 195 ATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVA--RKMDALTRVLEVEPFEA 252
           ATMPPAIR+++  YL DP EVT  AKT  + NI Q Y  V+   K+DALTR+LEVEPF+ 
Sbjct: 191 ATMPPAIRRIAQTYLKDPAEVTIAAKTTTSANIRQRYWWVSGLHKLDALTRILEVEPFDG 250

Query: 253 MIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAAR 312
           MI+F RTK ATEE+A+KL+ARG +AAAI+GD+ QA RE+TI  L+DG +DILVATDVAAR
Sbjct: 251 MIIFARTKAATEELAQKLQARGLAAAAINGDMQQAAREKTIAQLKDGKLDILVATDVAAR 310

Query: 313 GLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKATRQT 372
           GLDVER+SHVLNYDIP+DTESYVHRIGRTGRAGR+G A++FV+PRE  +L+AIE+ATRQ 
Sbjct: 311 GLDVERVSHVLNYDIPYDTESYVHRIGRTGRAGRNGDAILFVTPREKGMLRAIERATRQP 370

Query: 373 LTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVPMADIAAALAV 432
           + E QLP+V+ VN  RVA+F   IT  L G  IE++R L++ YE E++VP  DIAAA+A 
Sbjct: 371 IEEMQLPSVDAVNDTRVARFMTRITETLAGGQIEMYRDLLQRYESENNVPAIDIAAAMAK 430

Query: 433 QCRGGEAFLMAPD--------PPLSRRNRDQRRDRP------------------------ 460
             +G   FL+ P          P  R +R  R +RP                        
Sbjct: 431 LLQGDAPFLLTPPVRGAREDFAPRERNDRADRGERPRFEPKFERGPRAPDGERGARPPRP 490

Query: 461 -----------QRPKRRPD---------LTTYRVAVGKRHKIGPGAIVGAIANEGGLHRS 500
                      +RP+R P          + +YR+ VG  H + P  IVGAIANE GL   
Sbjct: 491 DRPAYGEDAGAERPRREPSAPRGEPEFGMESYRIEVGHTHGVKPANIVGAIANEAGLESR 550

Query: 501 DFGQIRIGPDFSLVELPAKLPRATLKKLAQTRISGVLIDLRPYRPPDAA 549
             G+I I  D+S+++LPA +PR  L  L +  +SG  +++R     +AA
Sbjct: 551 YIGRIDIQDDYSILDLPADMPRELLTHLKKVWVSGQQLNMRKLEEGEAA 599