Pairwise Alignments

Query, 563 a.a., Probable cold-shock DeaD-box protein A homolog DeaD (ATP-dependent RNA helicase dead homolog) from Mycobacterium tuberculosis H37Rv

Subject, 623 a.a., ATP-dependent RNA helicase DeaD (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  456 bits (1172), Expect = e-132
 Identities = 247/560 (44%), Positives = 359/560 (64%), Gaps = 37/560 (6%)

Query: 14  TFADLQIHPRVLRAIGDVGYESPTAIQAATIPALMAGSDVVGLAQTGTGKTAAFAIPMLS 73
           TF +L +   +LRA+ ++GYE PT IQ+A+I  LMAG D++G AQTGTGKT AFA+P+L+
Sbjct: 7   TFRELGLSENLLRALDELGYEKPTPIQSASIDPLMAGKDILGQAQTGTGKTGAFALPLLN 66

Query: 74  KIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLSQLNVLPIYGGSSYAVQLAGLRRGA 133
           K+  +   PQ LVL PTRELA+QVAEAF  Y  ++   +VLPIYGG S   QL  L+RG 
Sbjct: 67  KVT-SQTTPQILVLAPTRELAVQVAEAFSSYAKFMKNFHVLPIYGGQSMQQQLNALKRGP 125

Query: 134 QVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEMLTMGFADDVERILSETPEYKQVALF 193
           QV+VGTPGR++DH+ R TL L  +  LVLDEADEML MGF DD+E IL  TP  +Q+ALF
Sbjct: 126 QVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEMLKMGFIDDIEWILEHTPPQRQLALF 185

Query: 194 SATMPPAIRKLSAKYLHDPFEVTCKAKTAVAENISQSYIQVAR--KMDALTRVLEVEPFE 251
           SATMP  I++++ K+L +   ++  A     ++I Q ++QV++  K++AL RVLEVE  E
Sbjct: 186 SATMPEQIKRVANKHLKNATNISIAASHTTVDSIEQRFVQVSQHNKLEALVRVLEVENTE 245

Query: 252 AMIVFVRTKQATEEIAEKLRARGFSAAAISGDVPQAQRERTITALRDGDIDILVATDVAA 311
            +I+FVRT+ +  E+AEKL ARG++++ + GD+ Q  RER +  L++G +DIL+ATDVAA
Sbjct: 246 GIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQQARERAVEQLKNGKLDILIATDVAA 305

Query: 312 RGLDVERISHVLNYDIPHDTESYVHRIGRTGRAGRSGAALIFVSPRELHLLKAIEKATRQ 371
           RGLDVERI HV+NYDIP+DTE+YVHRIGRTGRAGR+G A++FV+ RE+ +L+ IE+AT  
Sbjct: 306 RGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRTGMAILFVTSREMRMLRTIERATNS 365

Query: 372 TLTEAQLPTVEDVNTQRVAKFADSITNALGGPGIELFRRLVEEYEREHDVPMADIAAALA 431
            ++  ++P+ E V  +R+++  + +   +    +E  R  V +  ++ +V    +AAAL 
Sbjct: 366 RISPMKVPSPETVAERRLSRLGEQLAQTMNND-LEFMREAVAQLCQQLEVDTDLLAAALL 424

Query: 432 VQCRGGEAFLMAPDPPLSRRNRDQRRDRPQRPKRR------------------------- 466
            Q +      +   P +  R RD+R +R +R   R                         
Sbjct: 425 HQVQQERPLQL---PAIQERVRDERSERSERGSDRGAERGERRSRESRPMPASLGSAEAL 481

Query: 467 ---PDLTT--YRVAVGKRHKIGPGAIVGAIANEGGLHRSDFGQIRIGPDFSLVELPAKLP 521
              PDL    Y + VG+ + +G G IVGAIANE  +     G I++    + V+LP  +P
Sbjct: 482 KDNPDLKMCRYVIDVGRENGVGVGNIVGAIANEANIDSRYIGAIQLYDSVTTVDLPDGMP 541

Query: 522 RATLKKLAQTRISGVLIDLR 541
           +  L+ L + R+ G  +++R
Sbjct: 542 KDVLQHLKKVRVCGKPLNIR 561