Pairwise Alignments

Query, 1234 a.a., Probable transcription-repair coupling factor Mfd (TRCF) from Mycobacterium tuberculosis H37Rv

Subject, 1147 a.a., transcription-repair coupling factor from Pantoea sp. MT58

 Score =  623 bits (1606), Expect = 0.0
 Identities = 410/1100 (37%), Positives = 592/1100 (53%), Gaps = 82/1100 (7%)

Query: 60   GPLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERLSPGVDTVGTRLMALRRLA 119
            GP+L++T   + A  L  E+R      V  L  WETLP++  SP  D +  RL  L +L 
Sbjct: 40   GPVLMITPDTQTALRLLDEIRQFTDLPVTHLADWETLPYDSFSPHQDIISARLSTLYQLP 99

Query: 120  HPDDAQLGPPLGVVVTSVRSLLQPMTPQLGMM-EPLTLTVGDESPFDGVVARLVELAYTR 178
                       G+++  V +L+Q + P   +    L +  G +   D +  +L +  Y  
Sbjct: 100  VMQR-------GMLIMPVNTLMQRVCPHSFLHGHALVMKQGQKLSRDRLRDQLEQAGYRH 152

Query: 179  VDMVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEI-DIHTL 237
            VD V   GE+A RG +LD+F   ++ P R++F+ DEI  +R+F V  QR++  + +I+ L
Sbjct: 153  VDQVMEHGEYATRGALLDLFPMGSDQPYRIDFFDDEIDSLRLFDVDSQRTLEAVTEINLL 212

Query: 238  VAFAC-RELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKLAEGIAVDGMEAVLPVL 296
             A     +    E  R+R  ++          V   +  +  ++++G    G+E   P+ 
Sbjct: 213  PAHEFPSDKAAIELFRSRWREIF--------DVRRESEHVYQQVSKGTLPAGIEYWQPLF 264

Query: 297  WSDGHALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEASWSVAALGTAENQAPVD 356
            +      L   LPD T ++ C          DL  + R F    W  A     EN+    
Sbjct: 265  FEQPLPSLFSYLPDNTLIVNC---------GDLEGSARRF----WQDAE-ARYENRRVDP 310

Query: 357  VEQLGGSGFVELDQVRAAAARTGHPWWTLSQLSDESAIELDVRAAPSARGH--------Q 408
            +  L     + L   R  A       W   Q+++E    L  +AA +  G+        Q
Sbjct: 311  MRPLLEPVTLWL---RPDALMGELKAWPRIQMTNEV---LPDKAANTNLGYTPLPDLAVQ 364

Query: 409  RDIDEIFAMLRAHIAT-GGYAALVAPGTG---TAHRVVERLSESDTPAGMLDPGQAPKPG 464
                     LR  I T  G         G   T   ++ R+     P    D     +  
Sbjct: 365  AQAKAPLDHLRQFIETFSGAVVFSVESEGRRETLQELLARIKLRPQPVHRFDETVDDR-- 422

Query: 465  VVGVLQGPLRDGVIIPGANLVVITETDLTGSRVSAAEGKRLAAKRRNIVDPLA------L 518
               ++ G    G I    N  +I E+DL G RVS    +R    RR I   +       L
Sbjct: 423  -FSLMIGASERGFIDTQGNRALICESDLLGERVS----RRRQDTRRTINPDILIRNLAEL 477

Query: 519  TAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQ 578
            + G  VVH +HG+GR++ +     GG + EYL+L YA         N  KLYVP+ SL  
Sbjct: 478  SPGQPVVHLEHGVGRYIGLTTLEAGGIQAEYLMLSYA---------NDAKLYVPVSSLHL 528

Query: 579  LSRYVGG---QAPALSRLGGSDWANTKTKARRAVREIAGELVSLYAKRQASPGHAFSPDT 635
            +SRY GG    AP L +LG   W+  + KA   VR++A EL+ +YA+R A  G AF  + 
Sbjct: 529  ISRYAGGADDNAP-LHKLGSDAWSRARQKAAEKVRDVAAELLDIYAQRAAKSGFAFKHNR 587

Query: 636  PWQAELEDAFGFTETVDQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQ 695
                   ++F F  T DQ  AI  V +DM +P+ MDR++CGDVG+GKTE+A+RAAF A++
Sbjct: 588  EQYQLFCESFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAIE 647

Query: 696  DGKQVAVLVPTTLLADQHLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIV 755
            + KQVAVLVPTTLLA QH   F +R + +PV I+ LSRF  A E   V++  +DG +DI+
Sbjct: 648  NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRTAKEQAQVLEQASDGKIDIL 707

Query: 756  IGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSL 815
            IGTH+LL + ++W DLGL++VDEE RFGV HKE IK++R  VD+LT++ATPIPRTL M++
Sbjct: 708  IGTHKLLMSDLKWHDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAM 767

Query: 816  AGIREMSTILTPPEERYPVLTYVGPHDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAA 875
            +G+R++S I TPP  R  V T+V   DD  I  A+ RE+LR GQ +Y++N V +I+ AA 
Sbjct: 768  SGMRDLSIIATPPARRLAVKTFVREFDDLVIREAILREVLRGGQVYYLYNDVENIEKAAQ 827

Query: 876  RVRELVPEARVVVAHGQMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVER 935
            R+ ELVPEARV + HGQM E  LE  +  F ++  ++LVCTTI+ETG+DI  ANT+I+ER
Sbjct: 828  RLSELVPEARVAIGHGQMRERDLERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER 887

Query: 936  ADTFGLSQLHQLRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVAL 995
            AD FGL+QLHQLRGRVGRS  + YA+ L P    +T  A+ RL  IA   +LGAG A+A 
Sbjct: 888  ADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKSMTADAHKRLEAIASLEDLGAGFALAT 947

Query: 996  KDLEIRGAGNVLGIEQSGHVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKD 1055
             DLEIRGAG +LG EQSG +  +GF LY+ L+  A++  +     + +  T    E    
Sbjct: 948  HDLEIRGAGELLGDEQSGQMETLGFTLYMELLENAVDALKAGREPSLEDLTSNQTE---- 1003

Query: 1056 VRIDLPVDAHLPPDYIASDRLRLEGYRRLAAASSDREVAAVVDELTDRYGALPEPARRLA 1115
              ++L + A LP  +I     RL  Y+R+A+A  + E+  +  E+ DR+G LP+PAR L 
Sbjct: 1004 --VELRMPALLPETFIPDVSTRLSLYKRIASAEVEEELQELKVEMIDRFGLLPDPARNLL 1061

Query: 1116 AVARLRLLCRGSGITDVTAA 1135
             VA +RL  R  G+  + A+
Sbjct: 1062 DVAIIRLKARAVGLRKIEAS 1081