Pairwise Alignments

Query, 1234 a.a., Probable transcription-repair coupling factor Mfd (TRCF) from Mycobacterium tuberculosis H37Rv

Subject, 1148 a.a., transcription-repair coupling factor from Klebsiella michiganensis M5al

 Score =  635 bits (1638), Expect = 0.0
 Identities = 416/1120 (37%), Positives = 601/1120 (53%), Gaps = 78/1120 (6%)

Query: 32   RAGGRPDELTLIAPASARLLVASALARQGPLLVVTATGREADDLAAELRGVFGDAVALLP 91
            +AG +     L   A A L+   A    GP++++    + A  L  E+R      VA L 
Sbjct: 12   KAGDQRQLGELTGAACATLVAEMAERHGGPVVLIAPDMQNALRLNDEIRQFTDSMVAGLA 71

Query: 92   SWETLPHERLSPGVDTVGTRLMALRRLAHPDDAQLGPPLGVVVTSVRSLLQPMTPQLGMM 151
             WETLP++  SP  D + +RL  L +L   +        GV++  V +L+Q + P   + 
Sbjct: 72   DWETLPYDSFSPHQDIISSRLATLYQLPTMER-------GVLIIPVSTLMQRVCPHNFLH 124

Query: 152  -EPLTLTVGDESPFDGVVARLVELAYTRVDMVGRRGEFAVRGGILDIFAPTAEHPVRVEF 210
               L +  G     D + A+L    Y  VD V   GE+A RG +LD+F   +E P R++F
Sbjct: 125  GHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQPYRLDF 184

Query: 211  WGDEITEMRMFSVADQRSIPEIDIHTLVAFACRELLLSEDVRA--RAAQLAARHPAAEST 268
            + DEI  +R+F V  QR++ E+        A   LL + +      A +L          
Sbjct: 185  FDDEIDSLRLFDVDSQRTLEEV--------ASINLLPAHEFPTDQAAIELFRSQWRDRFE 236

Query: 269  VTGSASDMLAKLAEGIAVDGMEAVLPVLWSDGHALLTDQLPDGTPVLVCDPEKVRTRAAD 328
            V   A  +  ++++G    G+E   P+ +++    L    P  T ++            D
Sbjct: 237  VKRDAEHIYQQVSKGTLPAGIEYWQPLFFNEPLPPLFSYFPAKTLIV---------NTGD 287

Query: 329  LIRTGREFL-EASWSVAALGTAENQAPVDVEQLGGSGFVELDQVRAAAARTGHPWWTLSQ 387
            L  +   F  E        G    +  +  EQL    ++  D++ +   +     W   Q
Sbjct: 288  LEASAERFQNETRARFENRGVDPMRPLLPTEQL----WLRSDELFSELKK-----WPRVQ 338

Query: 388  LSDESAIELDVRAAPSARGHQR------------DIDEIFAMLRAHIATGGYAALVAPGT 435
            L  E   E   +AA +  G+Q+             +D +   L +     G         
Sbjct: 339  LKTERLAE---KAANTNLGYQKLHELAIQAQNKAPLDNLRRFLESF---SGPVIFSVESE 392

Query: 436  GTAHRVVERLSESD-TPAGMLDPGQAPKPGVVGVLQGPLRDGVIIPGANLVVITETDLTG 494
            G    + E L+     P  +L   +A   G   ++ G    G I    NL +I E+DL G
Sbjct: 393  GRREALGEMLARIKIAPKHILRLEEATANGRY-LMIGAAEHGFIDSQRNLALICESDLLG 451

Query: 495  SRVSAA-EGKRLAAKRRNIVDPLA-LTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVL 552
             RV+   +  R       ++  LA L  G  VVH +HG+GR+  M     GG   EYL+L
Sbjct: 452  ERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGINGEYLML 511

Query: 553  EYASAKRGGGAKNTDKLYVPMDSLDQLSRYVGG---QAPALSRLGGSDWANTKTKARRAV 609
             YA         N  KLYVP+ SL  +SRY GG    AP L +LGG  WA  + KA   V
Sbjct: 512  TYA---------NDAKLYVPVSSLHLISRYAGGAEENAP-LHKLGGDAWARARQKAAEKV 561

Query: 610  REIAGELVSLYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEVKADMEKPIP 669
            R++A EL+ +YA+R A  G+AF  D        D F F  T DQ  AI  V +DM +P+ 
Sbjct: 562  RDVAAELLDIYAQRAAKAGYAFKHDKEQYQLFCDGFPFETTPDQAQAINAVLSDMCQPLA 621

Query: 670  MDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGERMSGFPVTIK 729
            MDR++CGDVG+GKTE+A+RAAF AV++ KQVAVLVPTTLLA QH   F +R + +PV I+
Sbjct: 622  MDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHFDNFRDRFANWPVRIE 681

Query: 730  GLSRFTDAAESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEH 789
             LSRF  A E   +++ +A+G +DI+IGTH+LLQ  V+ +DLGL++VDEE RFGV HKE 
Sbjct: 682  MLSRFRSAKEQAQILEQVAEGKIDILIGTHKLLQPDVKLRDLGLLIVDEEHRFGVRHKER 741

Query: 790  IKSLRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQIAAA 849
            IK++R  VD+LT++ATPIPRTL M+++G+R++S I TPP  R  V T+V  +D   +  A
Sbjct: 742  IKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDALVVREA 801

Query: 850  LRRELLRDGQAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLETTVQRFWNRE 909
            + RE+LR GQ +Y++N V +I  AA R+ ELVPEAR+ + HGQM E  LE  +  F ++ 
Sbjct: 802  ILREVLRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQR 861

Query: 910  HDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPPQVP 969
             ++LVCTTI+ETG+DI  ANT+I+ERAD FGL+QLHQLRGRVGRS  + YA+ L P    
Sbjct: 862  FNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKA 921

Query: 970  LTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGFDLYVRLVGE 1029
            +T  A  RL  IA   +LGAG A+A  DLEIRGAG +LG +QSG +  +GF LY+ L+  
Sbjct: 922  MTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSGSMETIGFSLYMELLEN 981

Query: 1030 ALETYRDAYRAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEGYRRLAAASS 1089
            A++  +     + +  T +  E      ++L + + LP D+I     RL  Y+R+A+A +
Sbjct: 982  AVDALKAGREPSLEDLTSQQTE------VELRMPSLLPDDFIPDVNTRLSFYKRVASAKN 1035

Query: 1090 DREVAAVVDELTDRYGALPEPARRLAAVARLRLLCRGSGI 1129
            + E+  +  EL DR+G LP+PAR L  +ARLR   +  GI
Sbjct: 1036 ENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGI 1075