Pairwise Alignments

Query, 1234 a.a., Probable transcription-repair coupling factor Mfd (TRCF) from Mycobacterium tuberculosis H37Rv

Subject, 1196 a.a., transcription-repair coupling factor from Bifidobacterium breve UCC2003

 Score = 1081 bits (2796), Expect = 0.0
 Identities = 597/1184 (50%), Positives = 787/1184 (66%), Gaps = 67/1184 (5%)

Query: 45   PASARLLVASALARQG-------PLLVVTATGREADDLAAELRGVF-GDA--VALLPSWE 94
            P   R  +A+A+A QG       P+++V A+GREA++    LR  + GD   +A L +WE
Sbjct: 60   PEGLRPALAAAIA-QGVNGGAGKPVVLVVASGREAEETVGSLRSWYDGDPNDIAQLEAWE 118

Query: 95   TLPHERLSPGVDTVGTRLMALRRLAHPDDAQ-LGPPLGVVVTSVRSLLQPMTPQLGMMEP 153
            TLPHERLSP  DTV +R+   RRL HP DA  +  P+ ++V  +RSL+QP+   LG +EP
Sbjct: 119  TLPHERLSPRADTVASRMAVFRRLKHPSDANPMFGPIRILVMPIRSLIQPVVQGLGDVEP 178

Query: 154  LTLTVGDESPFDGVVARLVELAYTRVDMVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGD 213
            L  TVG++ P D    RL+E AYTRV++V  RGEFAVRGGILD+F PTA HPVR+EF+GD
Sbjct: 179  LVFTVGEDLPLDEAAKRLIENAYTRVELVMDRGEFAVRGGILDVFPPTAPHPVRIEFFGD 238

Query: 214  EITEMRMFSVADQRSIPEIDIHTLVAFACRELLLSEDVRARAAQLAARHPAAESTVTGSA 273
            EI  ++ F  +DQR+  E  + T+ A ACREL L++ VR RA  L    P AE       
Sbjct: 239  EIDTIKEFHASDQRTYGE-GLKTIWATACRELQLTDAVRTRAKALIGSIPNAE------- 290

Query: 274  SDMLAKLAEGIAVDGMEAVLPVLWSDGHALLTDQLPDGTPVLVCDPEKVRTRAADLIRTG 333
             DML  +A  I V+GME+++P L  D    +   LP    VL+ DPEK+R  A DL +T 
Sbjct: 291  -DMLESIANAIPVEGMESLMPAL-VDHLEPVGSMLPKHAVVLLSDPEKLRRSAEDLAKTA 348

Query: 334  REFLEASWSVAALGTAENQAPVDVEQLGGSGFVELDQVRAAAARTGHPWWTLSQLSDESA 393
             EFL ASW VAA G     AP+  ++   + F++  +  ++   + HP   L+    ++ 
Sbjct: 349  NEFLAASWHVAASGHGAG-APISFDE---ASFLDYAETISSLEYSEHPVIRLTSFGVDTT 404

Query: 394  ----IELDVRAAPSARGHQRDIDE-IFAMLRAHIATGGYAALVAPGTGTAHRVVERLSES 448
                ++LD +     RG +    + I  +L A    G +  + A   GT  R+   L+ +
Sbjct: 405  LAGHVQLDAQNPAEFRGDEAKASQGIDGLLDA----GFHVTITAAAAGTLARLKRALNTT 460

Query: 449  DTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIPGANLVVITETDLTGSRVSAAEGKRLAAK 508
                                ++    DG +   A + ++TE DLTG R SA    +   +
Sbjct: 461  GITT-------------FDTIRSQAIDGFVDNAAKIALLTERDLTG-RSSAVAVAKTPKR 506

Query: 509  RRNIVDPLALTAGDLVVHDQHGIGRFVEMVERTVG-GAR---REYLVLEYASAKRGGGAK 564
            RR  +D + L  GD VVH+QHGIGRF+EM +RT+G GA    REYLV+EYA +KRG  A 
Sbjct: 507  RRKAIDLVELKKGDYVVHEQHGIGRFIEMRQRTIGTGANKTTREYLVIEYAPSKRGAPA- 565

Query: 565  NTDKLYVPMDSLDQLSRYVGGQAPALSRLGGSDWANTKTKARRAVREIAGELVSLYAKRQ 624
              DKL++P D LDQ+S+Y+G +AP L++LGGSDWA TK KAR+ V EIA +L+ LY+ RQ
Sbjct: 566  --DKLFIPTDQLDQVSKYIGAEAPKLNKLGGSDWAATKAKARKHVHEIADDLIKLYSARQ 623

Query: 625  ASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEVKADMEKPIPMDRVICGDVGYGKTE 684
             + G AFSPDTPWQ ELEDAF + ET DQLT I+EVK+DMEKP+PMDR+ICGDVG+GKTE
Sbjct: 624  RAKGFAFSPDTPWQKELEDAFPYQETADQLTTIDEVKSDMEKPVPMDRLICGDVGFGKTE 683

Query: 685  IAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGERMSGFPVTIKGLSRFTDAAESRAVI 744
            IAVRAAFKAVQDGKQVAVLVPTTLL  QH +TF +R  GFPV +  +SRF    E  A I
Sbjct: 684  IAVRAAFKAVQDGKQVAVLVPTTLLVQQHQETFTDRFEGFPVNVAAMSRFQTTKEINATI 743

Query: 745  DGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSA 804
            +GL +G+VD+VIGTH+LL   +++KDLGLV++DEEQRFGVEHKE +K+LRT+VDVL++SA
Sbjct: 744  EGLENGTVDVVIGTHKLLNPKIKFKDLGLVIIDEEQRFGVEHKETLKALRTNVDVLSLSA 803

Query: 805  TPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQIAAALRRELLRDGQAFYVH 864
            TPIPRTLEM++ GIREMST+ TPPE+R PVLTYVG ++D Q+ AA+RRELLR GQ FYVH
Sbjct: 804  TPIPRTLEMAVTGIREMSTLATPPEDRLPVLTYVGAYEDAQVTAAVRRELLRGGQVFYVH 863

Query: 865  NRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLETTVQRFWNREHDILVCTTIVETGLD 924
            NRV  I + A ++  LVPE+RV +AHG+M E  L+  ++ FW+R+ D+LVCTTI+ETGLD
Sbjct: 864  NRVQDISSIADKIHTLVPESRVGIAHGKMGEKQLDQIIRDFWHRDIDVLVCTTIIETGLD 923

Query: 925  ISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQN 984
            ISNANTLIV+ AD FGLSQLHQLRGRVGR RER YAYFLY P  P+TE ++DRLATIAQN
Sbjct: 924  ISNANTLIVDHADRFGLSQLHQLRGRVGRGRERAYAYFLYDPSKPMTEQSHDRLATIAQN 983

Query: 985  NELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGFDLYVRLVGEALETYRDAYRAAADG 1044
              LG+G  VA+KDLE+RG GN+LG EQSGH+ GVGFDLYVR+V EA+E Y++        
Sbjct: 984  TALGSGFDVAMKDLELRGTGNLLGDEQSGHIEGVGFDLYVRMVSEAVEKYKEPDEDV--- 1040

Query: 1045 QTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEGYRRLAAASSDREVAAVVDELTDRY 1104
                   EP  V IDLP++A +P DYI SD+LRLE YR+LA+A ++ ++  + +ELTDRY
Sbjct: 1041 -------EPVSVSIDLPIEASIPIDYIDSDKLRLEAYRKLASARNEADLKDLKEELTDRY 1093

Query: 1105 GALPEPARRLAAVARLRLLCRGSGITDVTAASAATVRLSPLTLPDSAQVRLKRMYPGAHY 1164
            G  P     L  VARL+   R  G++++ A S   VR+  +  P+S Q+R+ R+Y G  Y
Sbjct: 1094 GKPPVEFETLFDVARLKFKARKLGVSEILAQS-NRVRIGRIDPPESIQMRMTRIYKGTQY 1152

Query: 1165 RATTATVQVPIPRAGGLGAPRIRDVELVQMVADLITALAGKPRQ 1208
            R  T  + VP P  G LG   +   ++V     L+  LA +P++
Sbjct: 1153 RPVTHQLIVPTPFTGSLGQGPMSSDQVVLWTNQLLDDLAWRPQR 1196