Pairwise Alignments

Query, 838 a.a., DNA gyrase (subunit A) GyrA (DNA topoisomerase (ATP-hydrolysing)) (DNA topoisomerase II) (type II DNA topoisomerase) from Mycobacterium tuberculosis H37Rv

Subject, 879 a.a., DNA gyrase, A subunit (RefSeq) from Shewanella loihica PV-4

 Score =  707 bits (1825), Expect = 0.0
 Identities = 375/857 (43%), Positives = 538/857 (62%), Gaps = 42/857 (4%)

Query: 10  DSLDRIEPVDIEQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRS 69
           D    I P++IE E++ SY+DYAMSVIVGRALP+VRDGLKPVHRRVL+AM +     ++ 
Sbjct: 3   DLASSITPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELKNDWNKP 62

Query: 70  HAKSARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRY 129
           + KSAR V + +G YHPHGD+++YD++VRMAQP+S+RY LVDGQGNFGS   D  AAMRY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSMRYTLVDGQGNFGSVDGDAAAAMRY 122

Query: 130 TEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNI 189
           TE R+  LA ++L ++++ETVD++PNYDG  Q P VLP+R P LL NGS GIAVGMATNI
Sbjct: 123 TEIRMDKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRIPALLVNGSSGIAVGMATNI 182

Query: 190 PPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQGTADAYKTGRG 249
           PPHNL E+       ++      E+    +M  + GPDFPTA ++ G +G  DAYKTGRG
Sbjct: 183 PPHNLSEVISGCLALIDEPSLSIEQ----LMEHIPGPDFPTAAIVNGRKGIEDAYKTGRG 238

Query: 250 SIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDR 309
              MR    VE +  GR  +++TE+PYQVN    I  IAE V+D K+ GIS + D+ SD+
Sbjct: 239 KAVMRARATVETEDNGRERIIVTEIPYQVNKARLIEKIAELVKDKKIEGISGLRDE-SDK 297

Query: 310 VGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLDQLIRYYVDHQ 369
            G+RIVIE+KR  V +V++NNLY  TQLQTSFG NM+A+ +G P+   L +++  ++ H+
Sbjct: 298 DGMRIVIEVKRGEVGEVILNNLYAQTQLQTSFGINMVALTNGQPKLFNLKEMLECFILHR 357

Query: 370 LDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARAGLIE------ 423
            +V+ RRT + LRKA ERAHIL  L  AL  +D +IALI+AS T   A+  L+       
Sbjct: 358 REVVTRRTVFELRKARERAHILEALAIALANIDPIIALIKASPTPAEAKTKLVSQGWALG 417

Query: 424 ----------------------------LLDIDEIQAQAILDMQLRRLAALERQRIIDDL 455
                                       L  + E QAQAILD++L +L  LE ++I+ + 
Sbjct: 418 NVQGMLEKAGDDAARPEWLSAEFGIRDGLYYLTEQQAQAILDLRLHKLTGLEHEKILSEY 477

Query: 456 AKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIARED 515
            ++   IA L  IL  PER   ++++EL E+++  GD+RRT + A+  D+S EDLI  ED
Sbjct: 478 EELLELIAALLYILRSPERLMEVIKEELQEVLEVFGDERRTELNASAVDISLEDLINEED 537

Query: 516 VVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGR 575
           VVVT++  GYAK      Y++Q+RGGKG     +K +D V    V +THD IL F+  G+
Sbjct: 538 VVVTLSHLGYAKYQPLSDYQAQRRGGKGKAATKVKDEDFVEKLLVANTHDTILCFSDFGK 597

Query: 576 VYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKS 635
           +Y  K Y LP ASR ARG+ + NLL     ERI  ++ +R Y    Y+++AT +G VKK+
Sbjct: 598 MYWLKVYQLPLASRQARGRPIINLLPLAEGERITAILPVREYDADKYVIMATSHGTVKKT 657

Query: 636 KLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGR 695
            L  +   R+ GI+AVNL+D D+L+G  + +  ++++L S  G+ +RFS  ++ +R MGR
Sbjct: 658 SLDQYSRPRANGIIAVNLKDGDQLIGVDITNGDNEVMLFSNEGKVVRFS--EDQVRGMGR 715

Query: 696 ATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMY 755
             +GV+G++      ++SL V +    +L  T  GY KRT ++EYP + R  KGV+++  
Sbjct: 716 TATGVRGIKLEDGQSVVSLIVPKNDGAILTVTENGYGKRTELDEYPAKSRATKGVVSIKV 775

Query: 756 DRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAI 815
             R G +VGA+ V ++ E+  ++  G ++RT A  V   GR T+GV ++     +T++ +
Sbjct: 776 SERNGAVVGAVQVLENDEIMLISDKGTLVRTPASGVSTIGRNTQGVTIIRTATDETVVGL 835

Query: 816 ARNAEESGDDNAVDANG 832
            R  +E  D+   D  G
Sbjct: 836 QR-IDEIQDEQEFDEEG 851