Pairwise Alignments

Query, 838 a.a., DNA gyrase (subunit A) GyrA (DNA topoisomerase (ATP-hydrolysing)) (DNA topoisomerase II) (type II DNA topoisomerase) from Mycobacterium tuberculosis H37Rv

Subject, 919 a.a., DNA gyrase, A subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  722 bits (1863), Expect = 0.0
 Identities = 392/882 (44%), Positives = 546/882 (61%), Gaps = 64/882 (7%)

Query: 10  DSLDRIEPVDIEQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRS 69
           D    I P++IE E++ SY+DYAMSVIVGRALP+VRDGLKPVHRRVL+AM +     ++ 
Sbjct: 3   DLASSISPINIEDELKNSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMSELKNDWNKP 62

Query: 70  HAKSARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRY 129
           + KSAR V + +G YHPHGD+++YD++VRMAQP+SLRY LVDGQGNFGS   D  AAMRY
Sbjct: 63  YKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYTLVDGQGNFGSVDGDSAAAMRY 122

Query: 130 TEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNI 189
           TE R+  LA ++L ++++ETVD++PNYDG  Q P VLP+R PNLL NGS GIAVGMATNI
Sbjct: 123 TEIRMDKLAHQLLADLEKETVDYVPNYDGTEQIPAVLPTRVPNLLINGSSGIAVGMATNI 182

Query: 190 PPHNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQGTADAYKTGRG 249
           PPHNL E+       +    AD   ++  +M  + GPDFPTA +I G +G  DAYKTGRG
Sbjct: 183 PPHNLTEVVKGCLALI----ADPALSIEQLMDYIPGPDFPTAAIINGRKGIIDAYKTGRG 238

Query: 250 SIRMRGVVEVEEDSRGRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDR 309
              MR + EVE +  GR  +++TE+PYQVN    I  IAE V+D KL GIS + D+ SD+
Sbjct: 239 RAIMRALAEVETEENGRERIIVTEIPYQVNKARLIEKIAELVKDKKLEGISGLRDE-SDK 297

Query: 310 VGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLDQLIRYYVDHQ 369
            G+RIVIEIKR  V +VV+NNLY  TQ+Q SFG NM+A+ +G P+   L +++  ++ H+
Sbjct: 298 DGMRIVIEIKRGEVGEVVLNNLYAQTQMQCSFGINMVALTNGQPKLFNLKEMLECFILHR 357

Query: 370 LDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARAGLIE------ 423
            +V+ RRT + LRKA ERAHIL  L  AL  +D +IALI+AS T   A+  L+E      
Sbjct: 358 REVVTRRTVFELRKARERAHILEALAVALANIDPIIALIKASPTPADAKVKLVEQGWALG 417

Query: 424 ----------------------------LLDIDEIQAQAILDMQLRRLAALERQRIIDDL 455
                                       L  + E QAQAIL+++L RL  LE  +II + 
Sbjct: 418 HVQGMLEKAGDDAARPEWLEPEYGIRDGLYYLTEQQAQAILELRLHRLTGLEHDKIIAEY 477

Query: 456 AKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRRTRIIAADGDVSDEDLIARED 515
            ++   IA L  IL  PER   ++++EL EI+  +GD RRT I A + D+S EDLI  ED
Sbjct: 478 EELLEFIAGLLFILRSPERLMEVIKEELEEILAEYGDARRTVINANEIDMSLEDLINEED 537

Query: 516 VVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGR 575
           VVVT++  GYAK      Y++Q+RGGKG     +K +D V    V +THD IL F+  G+
Sbjct: 538 VVVTLSHLGYAKYQPLSDYQAQRRGGKGKVATKVKDEDFVEKLLVANTHDTILCFSDFGK 597

Query: 576 VYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKS 635
           +Y  K Y LP ASRT+RG+ + NLL     ERI  ++ +R Y +  Y+++AT NG VKK+
Sbjct: 598 MYWLKVYQLPLASRTSRGRPIVNLLPLADGERITAILPVREYAEDKYIIMATSNGTVKKT 657

Query: 636 KLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDE------- 688
            LT + + R+ GI+AVNL+D D+L+G  + +  D+++L S  G+ +RF   +E       
Sbjct: 658 ALTAYSNPRANGIIAVNLKDGDQLIGVDITNGDDEIMLFSNEGKVVRFKEGEEVAVLDEN 717

Query: 689 ----------------ALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYA 732
                            +RPMGR  +GV+G++     R++SL V ++   +L  T  GY 
Sbjct: 718 GNPVLDEEGNPQINFKGVRPMGRGATGVRGIKLEEGQRVVSLIVPKDDGAILTVTENGYG 777

Query: 733 KRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVR 792
           KRT + EYP + R  KGV+++    R G +VGA+ V  + E+  ++  G ++RT A  V 
Sbjct: 778 KRTELSEYPSKSRATKGVVSIKVSERNGAVVGAVQVGGNDEIMLISDKGTLVRTPANGVS 837

Query: 793 KAGRQTKGVRLMNLGEGDTLLAIARNAEESGDDNAV--DANG 832
             GR T+GV ++     + ++ + R  E  GD++ V  D NG
Sbjct: 838 IIGRNTQGVTIIRTASDEKVVGLQRIDEIQGDEDEVELDENG 879