Pairwise Alignments

Query, 351 a.a., tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 377 a.a., tRNA-specific 2-thiouridylase MnmA (RefSeq) from Shewanella amazonensis SB2B

 Score =  181 bits (458), Expect = 4e-50
 Identities = 133/360 (36%), Positives = 186/360 (51%), Gaps = 20/360 (5%)

Query: 2   KIAVALSGGTDSLFALLLLLEQGQDVFGLHAR-FLPPRADQPSGNPDPAEAIGAMCARLG 60
           K+ V +SGG DS  +  LL +QG  V GL  + +     D+     +  +   A+C +LG
Sbjct: 18  KVIVGMSGGVDSSVSAYLLKQQGYQVEGLFMKNWEEDDTDEYCAAAEDLKDAQAVCDKLG 77

Query: 61  VDFHAVDLADAFEEAVVAPFIEEYVVGRTPNPCARCNATMKFGLLLD-AARALGAARLAT 119
           +  H V+ A  + + V   F+ EY  GRTPNP   CN  +KF   L+ A   L A  +A 
Sbjct: 78  IKLHTVNFAAEYWDNVFEYFLAEYKAGRTPNPDIMCNKEIKFKAFLEFADDILDADYIAM 137

Query: 120 GHYVRQLRHPQWGMTLQRGADPAKDQSYFLSLVDRARLEQAVFPLGNWRKEQVKAELVKR 179
           GHYVR+ R       + RG D  KDQSYFL  +   ++ +++FP+G   K +V+    ++
Sbjct: 138 GHYVRR-RDTDGKTEMLRGIDGNKDQSYFLYTLSHEQVARSLFPVGELEKPEVRRIAEEQ 196

Query: 180 NIVPPLPSESQEICFVPGDDYRAFLRDRQVRLPG-PGPIVTMRGRKIGSHKGLWQYTEGQ 238
            ++     +S  ICF+    ++ FL      LP  PG I T  G  IG H+GL  +T GQ
Sbjct: 197 GLITHDKKDSTGICFIGERKFKDFL---ATYLPAQPGNIETPEGDIIGRHEGLMYHTLGQ 253

Query: 239 RRGLGIAW-----EEPLYVVSKDMENNVLLVG-GREH--LAARGCLTEDVNLL--VDPAD 288
           R+GLGI       ++P YVV KDM  NVL+V  G EH  L ++G     ++ +    PAD
Sbjct: 254 RKGLGIGGMKNSNDDPWYVVDKDMARNVLVVAQGHEHPRLMSKGMRVNQLHWVDRTGPAD 313

Query: 289 WPAEISVRTRYRQAPQPARVTVGD-TGMAVRFREPQTPPARGQVAAVYDAEGHVLAGGVI 347
             A ISV+TRYRQ   P  V + D   + V F EP      GQ A  YD E   L GG+I
Sbjct: 314 -GATISVKTRYRQQDIPCTVKIIDEQTIEVLFDEPVAAVTPGQSAVFYDGE-VCLGGGII 371