Pairwise Alignments

Query, 302 a.a., inner-membrane translocator (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 309 a.a., ABC transporter permease from Herbaspirillum seropedicae SmR1

 Score =  270 bits (691), Expect = 2e-77
 Identities = 142/305 (46%), Positives = 208/305 (68%), Gaps = 19/305 (6%)

Query: 6   FWELFFGGLTRGSIYALIALGYTMVYGIIELINFAHGEVYMMGAFTALIVAGALGIY--G 63
           F +    GL  GS+YALIALGYTMVYG++ LINFAHG++ M+GA   L +   +     G
Sbjct: 4   FIQQIINGLVLGSMYALIALGYTMVYGVLNLINFAHGDILMVGAMVGLSLLKVVQQVAPG 63

Query: 64  FPALAILIIAAVVAVIYCAAYGLTLEKIAYKPLRDAPRLSPLISAIGMSIFLQNYVILAQ 123
            P +  L+IA V A+  C    L +E+IAY+PLR+APRL+PLI+AIG+SI LQ   ++  
Sbjct: 64  LPGIVQLVIAIVGAIPVCIVVSLLIERIAYRPLRNAPRLAPLITAIGVSILLQTLAMMIW 123

Query: 124 TSDFMPFPNLVPQPDFLEPIAHIMGA----SEVLIIVTSAISMAALTLFIKYTRMGKAMR 179
               +PFP ++P     +P+ HI GA    ++++++  + ++M  L L ++ T+MG+AMR
Sbjct: 124 GRSPLPFPQVMPS----DPV-HIAGALISPTQIMLLALAVLAMVGLVLIVEKTKMGRAMR 178

Query: 180 ATAQNRKMAMLLGIDADKVISLTFVIGSSLAAVGGVLIASHVGQVNFAIGFIAGIKAFTA 239
           ATA+N ++A L+G+DA+KVI +TF IG+ LAA+ GV+ A++     FA+GF+ G+KAF+A
Sbjct: 179 ATAENPRIAGLMGVDANKVIVVTFAIGAGLAAIAGVMWAANYSTAQFAMGFVPGLKAFSA 238

Query: 240 AVLGGIGSIPGAMLGGLVLGWCESFATGYI--------SSDYEDALAFALLVLILIFRPS 291
           AVLGGIG+I GAMLGG++LG  ES   GYI         S+Y+D  AF +L+++L  RPS
Sbjct: 239 AVLGGIGNIYGAMLGGILLGLIESLGAGYIGDLTGNFLGSNYQDIFAFIVLIIVLTLRPS 298

Query: 292 GILGK 296
           GI+G+
Sbjct: 299 GIMGE 303