Pairwise Alignments

Query, 864 a.a., MscS Mechanosensitive ion channel (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 1096 a.a., Small-conductance mechanosensitive channel from Pseudomonas stutzeri RCH2

 Score =  190 bits (483), Expect = 3e-52
 Identities = 116/286 (40%), Positives = 165/286 (57%), Gaps = 18/286 (6%)

Query: 547  VNVGSVSFNSLRVLGLVLLFYLTRSAIAVGTSFLDNLPARLP-------RVERGVIPPLQ 599
            +   ++S N+L  LG +L+       IA+  +   NLP  L        R+ +G      
Sbjct: 809  LTTAAISLNNL--LGALLI-------IAITVALARNLPGLLEVMVLSKLRLAQGSAYATT 859

Query: 600  TGLTYALWALFGLVV-LNALGVSLTSLTVIAGGLSVGLGFGLQTIFNNFFSGLILIFGRS 658
            T L+YAL A FG+V  L+ LGVS   L  +   LSVGLGFGLQ IF NF SGLI++F R 
Sbjct: 860  TLLSYAL-AGFGIVATLSTLGVSWDKLQWLVAALSVGLGFGLQEIFANFISGLIILFERP 918

Query: 659  LLEGDIIQIGETWGTVRKISIRSTTVETFDNAVIFVPNSEFVSNRLTNWTRNSMRMRRDI 718
            +  GD++ IG   GTV +I IR+TT+  FD   I VPN  F++ +L NW+ +    R  +
Sbjct: 919  VRIGDVVTIGNLSGTVSRIRIRATTITDFDRKDIIVPNKTFITGQLINWSLSDTVTRVTL 978

Query: 719  AIGVAYGSDIDKVTELLKQAAEDHPRVMRDPAPNVLFQDFGPSSLDFVLRVWVDDLNHGV 778
             +GVAYGSD+++V  LL +AA+ +PRV++DP P V F +FG S+LD  LR+ V DL    
Sbjct: 979  KVGVAYGSDLEQVKTLLYKAAQANPRVLKDPEPQVFFLNFGESTLDHELRIHVRDLGDRN 1038

Query: 779  STASDLRRTIDRLFRENAIEISFPQMDVHVRGIEGMPVSTAALASP 824
                ++ R IDR F +  I I+F Q+DV ++   G  +  +A   P
Sbjct: 1039 PATDEINRFIDREFNKAGINIAFRQVDVFLKNFAGQQLQLSATPKP 1084



 Score = 29.3 bits (64), Expect = 0.001
 Identities = 40/186 (21%), Positives = 74/186 (39%), Gaps = 14/186 (7%)

Query: 62  TQQDAPDGQQAMDIIWQTRGQELSTLVEE--------TDRLRKALPDMVKALDSQVAAMQ 113
           T Q  P+  QA     QTR QE++ L++         ++  R  L   + +L +Q+   +
Sbjct: 134 TAQTRPERAQAQISTAQTRIQEINNLLKSGRESGKPLSEERRGLLDAEIVSLSAQIDLRR 193

Query: 114 RDYQRLFALYQLSRNHPSEMAAIRRQMAGVQRTLQGRLAPMEATDAAVRQRLDDFTALDK 173
           ++      L  L +     +A    +     + LQ  +   E   A   Q + +F+A  +
Sbjct: 194 QELAGNSLLQDLGKARRDLLAERIARAEQDTQALQSLI--NEKRRAESEQTVAEFSARVQ 251

Query: 174 ELSEH--LATERSSDLSKDLSEYLAKLNEGRKNLTTLRTRLARALDPGQAVNAKLTQALE 231
           +      LA E + +L   LS+YL +  E    L     R  + LD     +  L + + 
Sbjct: 252 QAGSDKLLAAESAENLK--LSDYLLRATERLNRLNQQNLRTRQQLDTLNQTDQALEEQIA 309

Query: 232 QIDAQL 237
            ++  L
Sbjct: 310 VLEGSL 315