Pairwise Alignments

Query, 438 a.a., type III secretion system ATPase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 446 a.a., flagellum-specific ATP synthase (RefSeq) from Shewanella amazonensis SB2B

 Score =  382 bits (980), Expect = e-110
 Identities = 205/415 (49%), Positives = 275/415 (66%), Gaps = 4/415 (0%)

Query: 24  GRVEQVVGTIIRAVVPGVKVGELCILRNPWENWTLRAEVVGFVKQVALLTPLGDLQGVSP 83
           G++ +VVG  + A      VG LC +        L AEVVGF + +  L P+ +L+GV P
Sbjct: 28  GQLVRVVGLTLEASGCRAPVGSLCAIDTM--GGELIAEVVGFDEDLLYLMPIEELKGVLP 85

Query: 84  ATEVIPTGEILSIPVGEDLLGRVLDGLGEPMDGGPPLKPRTRYPVYAQPPNPMQRRIIDR 143
              V P GE   I VG  LLGRVLDG GEP+DG  PL      P +    NP+ RR I  
Sbjct: 86  GARVRPLGEQTGIHVGMSLLGRVLDGGGEPLDGLGPLGTTDIAPRHGPAINPLARRPIHE 145

Query: 144 PISLGLRVLDGVLTCGEGQRMGIFAAAGGGKSTLLSSIIKGCSADVCVLALIGERGREVR 203
           P+ +G+R ++ +LT G+GQRMG+FA +G GKS LL  + +G +ADV V+ L+GERGREV+
Sbjct: 146 PLDVGIRAINAMLTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTADVIVVGLVGERGREVK 205

Query: 204 EFIEHDLGPEGRKKAVLVVSTSDRSSMERLKAAYTATAIAEYFRDQRRSVLLMMDSVTRF 263
           EFIE  LGPEGR ++V+V + +D S + RL+A  T+T IAEYFRD   +VLL+MDS+TR+
Sbjct: 206 EFIEEILGPEGRARSVVVAAPADTSPLMRLRACETSTRIAEYFRDLGFNVLLLMDSLTRY 265

Query: 264 GRAQREIGLAAGEPPTRRGFPPSVFSTLPRLMERAGNS--DKGSITALYTVLVEGDDMTE 321
            +AQREI LA GEPP  +G+PPSVF+ LPRL+ERAGN    +GSITA YTVL EGDD+ +
Sbjct: 266 AQAQREIALAVGEPPATKGYPPSVFAKLPRLVERAGNGGPGQGSITAFYTVLTEGDDLQD 325

Query: 322 PIADETRSILDGHIVLSRKLAAANHYPAIDVQASVSRVMNAIVDKEHKAAAQKLRKVLAK 381
           PIAD  R+ILDGHIVLSR LA + HYPAID++AS+SRV   ++   H  A +++++  + 
Sbjct: 326 PIADAARAILDGHIVLSRTLADSGHYPAIDIEASISRVAPMVISPAHLEAMRRVKQTYSL 385

Query: 382 YAEVELLVQIGEYKRGSDKEADEALDRVAAVNAFLRQGLDERSGFDDTLAALRKV 436
           Y +   L+ IG Y  GSD   D A+    A+NAFLRQG+ +     D+   L ++
Sbjct: 386 YQQNRDLISIGAYAAGSDPRIDNAIRLQPAMNAFLRQGMRDAISLSDSETMLGQI 440