Pairwise Alignments

Query, 277 a.a., type III secretion apparatus lipoprotein, YscJ/HrcJ family (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 573 a.a., Flagellar M-ring protein FliF from Xanthomonas campestris pv. campestris strain 8004

 Score = 55.5 bits (132), Expect = 3e-12
 Identities = 57/182 (31%), Positives = 85/182 (46%), Gaps = 6/182 (3%)

Query: 18  AALAVFLLMLLTGCKAELYKGLNEEQANTMLATLLRHGVPAEKLAAGKEGYALSVERDQI 77
           A LAVF      G +A LY GL +++ N   A LLR      K+   +   A+SV +D++
Sbjct: 45  AGLAVFFWSQKPGYQA-LYTGL-DDKGNAEAADLLRTAQIPFKI--DQSTGAISVPQDRL 100

Query: 78  VRALEILRENSLPREQYQNLGKVFSGD-GMIASPSEEKARLAYAISQELSDTFSRIDGVL 136
             A   L  + L  +Q     ++   D G   S   E AR  +A+  ELS T   +  V 
Sbjct: 101 YDARLKLAGSGLTGQQTGGGFELMEKDPGFGVSQFVENARYQHALETELSRTIGTLRPVR 160

Query: 137 TARVHVVLASSETASETRVPASAAVFLR-HGPESPVVNLIPKIRELAAKAVPGLDYERVS 195
            ARVH+ +      +  R  ASA+V L   G +    N +  I  L A ++P +  ERV+
Sbjct: 161 EARVHLAIPKPSAFTRQRDVASASVVLELRGGQGLERNQVDAIVNLVASSIPDMTPERVT 220

Query: 196 VM 197
           V+
Sbjct: 221 VV 222