Pairwise Alignments

Query, 1000 a.a., diguanylate cyclase with PAS/PAC and GAF sensors (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 492 a.a., Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain (NCBI) from Rhodospirillum rubrum S1H

 Score =  181 bits (459), Expect = 1e-49
 Identities = 135/431 (31%), Positives = 211/431 (48%), Gaps = 50/431 (11%)

Query: 594 RFMEANSRIIEMYGWPDRAEFMEKMRSTEWYVDSEARGRMVGTLLR----RGEFRNIEVE 649
           R + AN   + + G PD A+ + +    E ++  + R  ++    R    + +  +  +E
Sbjct: 64  RPLYANREFLRLLGLPD-ADTLLRPAGLERFLPEDNRQVLLDMTHRLFSHQSQRASQRLE 122

Query: 650 MRRRDGSTVWFEYSGKL-----------------------------------DGDTIIGV 674
           + R D +T+W ++S  L                                       ++ +
Sbjct: 123 VVRADNATLWLDFSAALGRWAERDVVQIAVVDATERVTHESELEFNRAQLENQAVELVAL 182

Query: 675 AQDVT-QRRAAEAARQRSEAHYRLLFEAAA---DAIFLHDPEGKFLDVNEVACRRLGYTR 730
           A+D+  +R   E AR  ++   R L    A   +  F  D EG+    N       G   
Sbjct: 183 AEDLNAEREQLETARLDADEGRRFLQTLIATIPNPFFHQDLEGRIRGCNAAFAALHGRDH 242

Query: 731 R-ELLAMTPRELDAEEFAEQVGERI--RRLREEGSLTFESAHRTRNGTVLPVEIH-AKLL 786
           R ++  +T  +L    F+ +  ER+    + + G++++E+      G    +  + A L 
Sbjct: 243 RTDMFGLTVADLTDAAFSSRT-ERLDAELMAKGGNVSYEAVFADAEGRARTMIYNKAVLT 301

Query: 787 DFDGKPV-VLSIARDITDRKRLEQALMREATTDPLTGIRNRRQFFVDAEREMGRAVRYGR 845
           D  G+ V ++++  DIT++KR+E+AL R ATTDPLTG  NRR F   A R++  A R+G 
Sbjct: 302 DAAGQAVGLVAVITDITEQKRMEEALRRLATTDPLTGALNRRAFMEAARRDLALAQRHGE 361

Query: 846 PLAVLMLDLDRFKRVNDRFGHHAGDAVLMGCVQACQQALRETDILGRLGGEEFAAVLLET 905
           P+ V + D+D FKRVND+ GH  GD  L   V     ALR +D+LGR+GGEEFA +L  T
Sbjct: 362 PVTVALADIDHFKRVNDQHGHATGDEALKTFVATVHGALRASDVLGRMGGEEFALILPHT 421

Query: 906 DLDDALAAAERLRRAVEEMDVPFSGQRLRCTVSIGLALRGPGDGALDDILRRADSALYAA 965
            L  A+  A+RLR+ +  + VP     +  TVSIGLA  G     +D +L+ AD ALY A
Sbjct: 422 ALASAMLLADRLRQTLANLRVPCPSGEVEFTVSIGLAELGTHGTTIDTLLQAADEALYRA 481

Query: 966 KEAGRNRVMLA 976
           K AGRNRV+ A
Sbjct: 482 KSAGRNRVIAA 492



 Score = 26.2 bits (56), Expect = 0.006
 Identities = 22/86 (25%), Positives = 33/86 (38%), Gaps = 15/86 (17%)

Query: 496 DDETTLAATTLTSLLDRTQS--TSRLQHRLRGKDGSYLWTDISASP-------------L 540
           D  T +   T+  L D   S  T RL   L  K G+  +  + A               L
Sbjct: 241 DHRTDMFGLTVADLTDAAFSSRTERLDAELMAKGGNVSYEAVFADAEGRARTMIYNKAVL 300

Query: 541 EGPNGEVEAALAIIVDINEQRTAQQA 566
               G+    +A+I DI EQ+  ++A
Sbjct: 301 TDAAGQAVGLVAVITDITEQKRMEEA 326



 Score = 25.4 bits (54), Expect = 0.010
 Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 5/85 (5%)

Query: 225 DEVGLAAEPFTLAAQAVPSASVPSARMPDGTG-GYPVLLADGRVLRRTY----RTLRGEY 279
           D  GL     T AA +  +  + +  M  G    Y  + AD     RT       L    
Sbjct: 245 DMFGLTVADLTDAAFSSRTERLDAELMAKGGNVSYEAVFADAEGRARTMIYNKAVLTDAA 304

Query: 280 GRTWGSVWLFEDVTAEVRAQEALTR 304
           G+  G V +  D+T + R +EAL R
Sbjct: 305 GQAVGLVAVITDITEQKRMEEALRR 329