Pairwise Alignments

Query, 1000 a.a., diguanylate cyclase with PAS/PAC and GAF sensors (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 855 a.a., Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) from Rhodospirillum rubrum S1H

 Score =  184 bits (467), Expect = 2e-50
 Identities = 162/569 (28%), Positives = 254/569 (44%), Gaps = 64/569 (11%)

Query: 438 LALGRSEELFRGIFSTASVGIVLLDRFGLLVRVNDACARMLGYATDEMRGQHFSRFMHDD 497
           +A G S  LF+ +     VG  LL R G++V  N   A  +G   D + G   + ++   
Sbjct: 32  IAEGLSAALFQSVVEALPVGTALL-RDGVIVHANATLAGQIGETIDTLIGSPLTSYLTPA 90

Query: 498 ETTLAATTLTSL--LDRTQSTSRLQHRLRGKDGSYLWTDISASPLEGPNGEVEAALAIIV 555
           +       +     L       R+ H +R   GS     +  SPL+  NG     + I  
Sbjct: 91  DALAVQKVVEGAIALHGGVPVRRIAH-IRHISGSERVYSLRFSPLD--NGPHPLLVVITR 147

Query: 556 DINEQRTAQQAQEDSERRYRALFENAQVGIFRTRISDGRFMEANSRIIEMYGWPDRAEFM 615
           D+  Q  A+ A   +E +YRA+FENA  GI+++   DG +++ N  +  +YG+   AE +
Sbjct: 148 DMTAQVAAENALRAAEGKYRAIFENAVEGIYQST-PDGTYLDVNPALARIYGYASPAELI 206

Query: 616 EKMR--STEWYVDSEARGRMVGTLLRRGEFRNIEVEMRRRDGSTVWFEYSGKL----DGD 669
                 +++ YVD   RG     +   GE R+   E+ R DG T+W   + +     D +
Sbjct: 207 AHFTDIASQLYVDGTKRGEFQRLMRETGEVRDFTAEVWRCDGHTIWITENARCVRGPDNE 266

Query: 670 TII--GVAQDVTQRRAAEAARQRSEAHYRLL---FEAAADAIFLHDPEGKFLDVNEVACR 724
            +   G  +D+T       A+++S+   RLL   F + A+ I L + +     VN     
Sbjct: 267 VLYYEGTVEDIT-------AQRQSQETMRLLGKVFTSIAEGIVLLERDLTVRTVNPAFEA 319

Query: 725 RLGYTRREL-----------------LAMTPRELDAEEF--AEQVGERIRRLREEGSLTF 765
             G  R+++                 LA    E+D       E  GER       G +T 
Sbjct: 320 MTGLLRQDMEGRPARLFASGLHENDFLATVAAEVDRAGLWRGEIWGERREGPPYSGEMTV 379

Query: 766 ESAHRTRNGTVLPVEIHAKLLDFDGKPVVLSIARDITDRKRLEQALMREATTDPLTGIRN 825
            +A RTR G                    ++   DIT RKR E+ +  +A  D LT + N
Sbjct: 380 -TAVRTRAGETTHY---------------VAAITDITKRKRDEEHIRFQANFDMLTHLPN 423

Query: 826 RRQFFVDAEREMGRAVRYGRPLAVLMLDLDRFKRVNDRFGHHAGDAVLMGCVQACQQALR 885
           R       E+ M +A R GR + V+ LDLDRFK++ND +GH AGD VL    +  +  +R
Sbjct: 424 RHLIMDRLEQAMHQAQRTGRQVCVMFLDLDRFKQINDSYGHSAGDEVLKLTARRLRNCVR 483

Query: 886 ETDILGRLGGEEFAAVLLETDLDDALAAAERLRRAVEEMDVPF--SGQRLRCTVSIGLAL 943
            +D +GRLGG+EF  +L  ++++D  A A    + +  +  PF   G  + C  S+G+  
Sbjct: 484 ISDSVGRLGGDEFIVIL--SNVEDQHAGAYIAEKILYSLSEPFPIGGTEVFCIPSVGITY 541

Query: 944 RGPGDGALDDILRRADSALYAAKEAGRNR 972
                    D+LR AD A+Y AK+ G  R
Sbjct: 542 FPDHGETAPDLLRNADVAMYHAKQGGERR 570



 Score = 51.6 bits (122), Expect = 2e-10
 Identities = 91/343 (26%), Positives = 137/343 (39%), Gaps = 39/343 (11%)

Query: 420 PARVVGTHMDITAAVSQRLALGRSEELFRGIFSTASVGIVLLDRFGLLVRVNDACARMLG 479
           P  VV T  D+TA V+   AL  +E  +R IF  A  GI      G  + VN A AR+ G
Sbjct: 140 PLLVVITR-DMTAQVAAENALRAAEGKYRAIFENAVEGIYQSTPDGTYLDVNPALARIYG 198

Query: 480 YATDEMRGQHFSRF---MHDDETTLAATTLTSLLDRTQSTSRLQHRLRGKDGSYLWTDIS 536
           YA+      HF+     ++ D T         L+  T         +   DG  +W   +
Sbjct: 199 YASPAELIAHFTDIASQLYVDGTKRG--EFQRLMRETGEVRDFTAEVWRCDGHTIWITEN 256

Query: 537 ASPLEGPNGEVEAALAIIVDINEQRTAQQAQEDSERRYRALFENAQVGI------FRTRI 590
           A  + GP+ EV      + DI    TAQ+  +++ R    +F +   GI         R 
Sbjct: 257 ARCVRGPDNEVLYYEGTVEDI----TAQRQSQETMRLLGKVFTSIAEGIVLLERDLTVRT 312

Query: 591 SDGRFMEANSRII--EMYGWPDRAEFMEKMRSTEWYVDSEARGRMVGTLLRRGEFRNIEV 648
            +  F EA + ++  +M G P R  F   +   ++     A     G  L RG     E+
Sbjct: 313 VNPAF-EAMTGLLRQDMEGRPARL-FASGLHENDFLATVAAEVDRAG--LWRG-----EI 363

Query: 649 EMRRRDGSTVWFEYSGKLDGDTIIGVAQDVTQRRAA---EAARQRSEAHYRLLFEAAADA 705
              RR+G      YSG++    +   A + T   AA      R+R E H R  F+A  D 
Sbjct: 364 WGERREGP----PYSGEMTVTAVRTRAGETTHYVAAITDITKRKRDEEHIR--FQANFDM 417

Query: 706 IFLHDPEGKFLDVNEVACRRLGYTRRELLAMTPRELDAEEFAE 748
           +         +D  E A  +   T R++  M    LD + F +
Sbjct: 418 LTHLPNRHLIMDRLEQAMHQAQRTGRQVCVMF---LDLDRFKQ 457