Pairwise Alignments

Query, 1000 a.a., diguanylate cyclase with PAS/PAC and GAF sensors (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 632 a.a., Putative diguanylate cyclase (GGDEF domain) with PAS/PAC sensor domain (NCBI) from Rhodospirillum rubrum S1H

 Score =  186 bits (472), Expect = 4e-51
 Identities = 113/301 (37%), Positives = 163/301 (54%), Gaps = 7/301 (2%)

Query: 680 QRRAAEAARQRSEAHYRL--LFEAAADAIFLHDPEGKFLDVNEVACRRLGYTRRELLAMT 737
           + + AE  RQ +E   R+     AA DA+ + D +G   + N  A    GY   E+   +
Sbjct: 320 ESKVAERTRQLAEGEERMRGFIMAARDAVVIIDQKGIISEFNPSATELFGYDVEEVRGQS 379

Query: 738 PRELDAEEFAEQVGERIRRLREEGSLTF----ESAHRTRNGTVLPVEIHAKLLDFDGKPV 793
              L    +A      +R+ +  G        E   R +NG+  P+E+      FDG  V
Sbjct: 380 VNMLMPATYARDHDGHLRKGKPSGQRAIGRGREMIGRRKNGSEFPIELTVGTQSFDGTRV 439

Query: 794 VLSIARDITDRKRLEQALMREATTDPLTGIRNRRQFFVDAEREMGRAVRYGRPLAVLMLD 853
            + + RDIT+RK  E+ L R A  D LTG+ NRR F  ++E  +  A R+GR L+++++D
Sbjct: 440 HIGVIRDITERKATEETLRRLANIDGLTGVLNRRSFTEESELLLSLANRHGRRLSMMIVD 499

Query: 854 LDRFKRVNDRFGHHAGDAVLMGCVQACQQALRETDILGRLGGEEFAAVLLETDLDDALAA 913
            D FK VND +GH AGD VL          LR+TD+LGR+GGEEFA +L ETD + A   
Sbjct: 500 ADHFKGVNDTYGHDAGDRVLKALTGEIAGVLRKTDLLGRIGGEEFAILLPETDQEGAEGL 559

Query: 914 AERLRRAVEEMDVPF-SGQRLRCTVSIGLALRGPGDGALDDILRRADSALYAAKEAGRNR 972
           A R+  A+  ++VP   G  L+ TVS+G++ R       D +L+ AD+ALYAAK  GR+R
Sbjct: 560 AWRVVLAIRALEVPLPEGGVLKVTVSVGVSCRNTEAATFDWMLKEADTALYAAKHGGRDR 619

Query: 973 V 973
           V
Sbjct: 620 V 620



 Score = 39.3 bits (90), Expect = 9e-07
 Identities = 17/55 (30%), Positives = 28/55 (50%)

Query: 440 LGRSEELFRGIFSTASVGIVLLDRFGLLVRVNDACARMLGYATDEMRGQHFSRFM 494
           L   EE  RG    A   +V++D+ G++   N +   + GY  +E+RGQ  +  M
Sbjct: 330 LAEGEERMRGFIMAARDAVVIIDQKGIISEFNPSATELFGYDVEEVRGQSVNMLM 384



 Score = 32.3 bits (72), Expect = 1e-04
 Identities = 40/163 (24%), Positives = 68/163 (41%), Gaps = 17/163 (10%)

Query: 535 ISASPLEGPNGEVEAALAIIVDINEQRTAQQAQEDSERRYRALFENAQVGIFRTRISDGR 594
           +S   LE  N  +E+ +A       +RT Q A+ +   R   +     V I   +   G 
Sbjct: 307 VSLLDLERANASLESKVA-------ERTRQLAEGEERMRGFIMAARDAVVIIDQK---GI 356

Query: 595 FMEANSRIIEMYGWPD---RAEFMEKMRSTEWYVDSEARGRMVGTLLRRGEFRNIEVEMR 651
             E N    E++G+     R + +  +    +  D +   R      +R   R  E+  R
Sbjct: 357 ISEFNPSATELFGYDVEEVRGQSVNMLMPATYARDHDGHLRKGKPSGQRAIGRGREMIGR 416

Query: 652 RRDGSTVWFEYS---GKLDGDTI-IGVAQDVTQRRAAEAARQR 690
           R++GS    E +      DG  + IGV +D+T+R+A E   +R
Sbjct: 417 RKNGSEFPIELTVGTQSFDGTRVHIGVIRDITERKATEETLRR 459