Pairwise Alignments

Query, 1000 a.a., diguanylate cyclase with PAS/PAC and GAF sensors (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 1010 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score =  195 bits (496), Expect = 1e-53
 Identities = 188/708 (26%), Positives = 308/708 (43%), Gaps = 64/708 (9%)

Query: 297 RAQEALTRSEERLKLALDAASEAHWDWNFETGELYCSPRYYEMLGYVPGEFECTHDALRD 356
           R +  L R       A   A+   W+ +    +++ S   Y +LGY+P   + +  A   
Sbjct: 314 RLETMLARERGHFIEAQRVANLGSWERDIPGNQVWWSDETYRILGYLPESQKPSLQAFLA 373

Query: 357 LMHPDDLCEVTTALCMPDPAVSHAVEACGVGQFEVQFRLRAKGGDWKWMLARGRVLARRE 416
            ++P D   +          V+ A      G  ++  RL   G   +++   GR   R  
Sbjct: 374 RVNPRDRKRIE---------VNFAQVREQGGSLDIACRLLLPGNVERYVHLGGRA-ERDG 423

Query: 417 DGSPARVVGTHMDITAAVSQRLALGRSEELFRGIFSTASVGIVLLDRFGLLVRVNDAC-- 474
            G P+R+ GT  D+T  ++ + AL  +EE ++     A  G+     +   V  N A   
Sbjct: 424 SGRPSRLTGTLQDVTDYMNMQQALADAEERWKFALDGADAGV-----WDWFVADNRAYFS 478

Query: 475 ---ARMLGYATDEMRGQH--FSRFMHDDETTLAATTLTSLLDRTQSTSRLQHRLRGKDGS 529
                +LGY  +E+  +H  +   +H D+   A   +T           ++ RLR KDG+
Sbjct: 479 PRWKAILGYRDEELPSRHEEWLERLHPDDRERAMAAVTDHFAGRTPVYEMEFRLRHKDGN 538

Query: 530 YLWTDISASPL--EGPNGEVEAALAIIVDINEQRTAQQAQEDSERRYRALFENAQVGIFR 587
           Y W  +S   +    P G     L II DI+ ++ A+     SE   R+L      G+  
Sbjct: 539 YRWV-LSRGKVCARDPEGRPLRMLGIISDISARKQAELDLARSEAMQRSLVSAMAEGVV- 596

Query: 588 TRISDGRFMEANS---RIIEMYGWPDRAEFMEKMRST--EWYVDSEARGRMVG------T 636
            +   G+ + AN+   RI+ +       E +  + ST  EW    E      G       
Sbjct: 597 VQDQAGKIISANASARRILRI------GENLVGLDSTDPEWQAVREDGSPFPGCDHPAMV 650

Query: 637 LLRRG-EFRNIEVEMRRRDGSTVWFE-------YSGKLDGDTIIGVAQDVTQRRAAEAAR 688
            LR G    NI + + R D   +W         ++ +     ++    D+T+ +AAE   
Sbjct: 651 TLRTGVSCDNIIMGLHRPDAGLIWLSVNSRPLNFADERQPFAVVTSFADITEIKAAEL-- 708

Query: 689 QRSEAHYRLLFEAAADAIFLHDPEGKFLDVNEVACRRLGYTRRELLAMTPRELDAEEFAE 748
             S   YR + E A  AI + D +G   +VN      LGY+R E L        +   + 
Sbjct: 709 --SSRIYRDVLERAGRAILITDGDGTINNVNSAFVSLLGYSREECLGRRTGFFRSNRHSP 766

Query: 749 QVGERI-RRLREEGSLTFESAHRTRNGTVLPVEIHAKLLDF--DGKPVVLSIARDITDRK 805
           +   R+ + L+  G    E  +R + G  + VE+  + +     G    +++ +D+T+ +
Sbjct: 767 EFFSRMWQALKTRGEWRGEIWNRRKTGEAILVELDVRSVTDAQGGVRQFVAVYQDVTELR 826

Query: 806 RLEQALMREATTDPLTGIRNRRQFFVDAEREMGRAVRYGRPLAVLMLDLDRFKRVNDRFG 865
           R ++ + R A  DPLTG+ NR  F    ++ +  A R G  L +L +DLD FK VND +G
Sbjct: 827 RSQEEMWRLAHHDPLTGLPNRSLFLERLDQALAHARRQGERLGLLYMDLDGFKSVNDTYG 886

Query: 866 HHAGDAVLMGCVQACQQALRETDILGRLGGEEFAAVLLETDLDDALAAAERLRRAVEE-- 923
           H AGD VL    +  Q A+R +D + RL G+EFA +L    ++D L   ER+   +E   
Sbjct: 887 HQAGDTVLQEVGRRLQNAVRTSDTVARLAGDEFAVLLAHLSVEDDL---ERVMGEIENAV 943

Query: 924 -MDVPFSGQRLRCTVSIGLALRGPGDGALDDILRRADSALYAAKEAGR 970
              V + GQ LR  VSIG A+        + ++  AD A+Y AK+  R
Sbjct: 944 ARPVMWQGQELRVGVSIGSAVFPDQADVAESLIGAADQAMYLAKQQHR 991



 Score =  145 bits (365), Expect = 2e-38
 Identities = 149/529 (28%), Positives = 221/529 (41%), Gaps = 61/529 (11%)

Query: 261 LLADGRVLRRTY---RTLRGEYGRTWGSVWLFEDVTAEVRAQEALTRSEERLKLALDAAS 317
           LL  G V R  +   R  R   GR        +DVT  +  Q+AL  +EER K ALD A 
Sbjct: 403 LLLPGNVERYVHLGGRAERDGSGRPSRLTGTLQDVTDYMNMQQALADAEERWKFALDGAD 462

Query: 318 EAHWDWNFETGELYCSPRYYEMLGYVPGEFECTHDALRDLMHPDDLCEVTTALCMPDPAV 377
              WDW       Y SPR+  +LGY   E    H+   + +HPDD      A+       
Sbjct: 463 AGVWDWFVADNRAYFSPRWKAILGYRDEELPSRHEEWLERLHPDDRERAMAAV------T 516

Query: 378 SHAVEACGVGQFEVQFRLRAKGGDWKWMLARGRVLARREDGSPARVVGTHMDITAAVSQR 437
            H      V  +E++FRLR K G+++W+L+RG+V AR  +G P R++G   DI+A     
Sbjct: 517 DHFAGRTPV--YEMEFRLRHKDGNYRWVLSRGKVCARDPEGRPLRMLGIISDISARKQAE 574

Query: 438 LALGRSEELFRGIFSTASVGIVLLDRFGLLVRVNDACARMLGYATD----EMRGQHFSRF 493
           L L RSE + R + S  + G+V+ D+ G ++  N +  R+L    +    +     +   
Sbjct: 575 LDLARSEAMQRSLVSAMAEGVVVQDQAGKIISANASARRILRIGENLVGLDSTDPEWQAV 634

Query: 494 MHDDETTLAATTLTSLLDRT-QSTSRLQHRLRGKDGSYLWTDISASPLE-GPNGEVEAAL 551
             D            +  RT  S   +   L   D   +W  +++ PL      +  A +
Sbjct: 635 REDGSPFPGCDHPAMVTLRTGVSCDNIIMGLHRPDAGLIWLSVNSRPLNFADERQPFAVV 694

Query: 552 AIIVDINEQRTAQQAQEDSERRYRALFENAQVGIFRTRISDGRFMEANSRIIEMYGWPDR 611
               DI E + A    E S R YR + E A   I  T   DG     NS  + + G+  R
Sbjct: 695 TSFADITEIKAA----ELSSRIYRDVLERAGRAILITD-GDGTINNVNSAFVSLLGY-SR 748

Query: 612 AE--------FMEKMRSTEWYVDSEARGRMVGTLLRRGEFRNIEVEMRRRDGSTVWFEYS 663
            E        F     S E++       RM   L  RGE+R  E+  RR+ G  +  E  
Sbjct: 749 EECLGRRTGFFRSNRHSPEFF------SRMWQALKTRGEWRG-EIWNRRKTGEAILVELD 801

Query: 664 GKLDGDT------IIGVAQDVTQRRAAEAARQRSEAHYRLLFEAAADAIFLHDPEGKFLD 717
            +   D        + V QDVT+ R ++    R  AH+  L      ++FL     + LD
Sbjct: 802 VRSVTDAQGGVRQFVAVYQDVTELRRSQEEMWRL-AHHDPLTGLPNRSLFL-----ERLD 855

Query: 718 VNEVACRRLGYTRRELLAMTPRELDA-----EEFAEQVGERIRRLREEG 761
                 RR G    E L +   +LD      + +  Q G+ +  L+E G
Sbjct: 856 QALAHARRQG----ERLGLLYMDLDGFKSVNDTYGHQAGDTV--LQEVG 898