Pairwise Alignments

Query, 1000 a.a., diguanylate cyclase with PAS/PAC and GAF sensors (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 868 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score =  164 bits (415), Expect = 2e-44
 Identities = 171/616 (27%), Positives = 267/616 (43%), Gaps = 87/616 (14%)

Query: 435 SQRLALGRSEELFRG-IFSTASVGIVLLDRFGLLVRVNDACARMLGYATDEMRGQ----- 488
           SQRL   R   L    +  ++   I++++   ++  +N A + + GY+ +E  G      
Sbjct: 267 SQRLQQSRHALLLASKVAESSQQAIMIVNAERIIQSINPAFSAITGYSAEEAVGHDTRLL 326

Query: 489 ----HFSRFMHDDETTLAATTLTSLLDRTQSTSRLQHRLRGKDGSYLWTDISASPLEGPN 544
               H + F       LAA  + S          + +R   K+G     +++ + ++G  
Sbjct: 327 KSGLHDADFYRQLYADLAAFGVWS--------GEIWNRR--KNGELYPENLTITSVKGEG 376

Query: 545 GEVEAALAIIVDINEQRTAQQAQEDSERRYRA-------LFENAQVGIFRTRISDGRFME 597
           G+V   + +  D+ EQ+ A+   ++S +R          + +   V +F  +  DGR++ 
Sbjct: 377 GQVINYVCVFTDMTEQKRARDDLKESHQRLEQQSSLTEMILDTLPVMVF-VKDEDGRYLV 435

Query: 598 ANSRIIEMYGWPDRAEFMEKMRSTEWYVDSEARGRMVGT-LLRRGEFRNIEVEMRRRDGS 656
            N       G  D+ E + +     +  D  +R R      L   +    E +     G 
Sbjct: 436 MNEAAAAFVGH-DKHEVVGRSDFELYPADVASRLRQDDIKALAAKKVTGREEKHLTPKGE 494

Query: 657 TVWFEYSGKLD---GDTIIGVAQDVTQRRAAE----AARQ-----RSEAHYRLLFEAAAD 704
                Y   +D      +IG + D+++R+ AE    A RQ      S+A  +++ +A  +
Sbjct: 495 RYLLSYKRGVDLGGRRLLIGSSTDISERKQAEQLLAAERQVLELIASDASLQVVLDALCN 554

Query: 705 -----------AIFLHDPEGKFLDVNEV-----ACRRLGY----------------TRRE 732
                      A+ L  P+   L +         CR +G                 T ++
Sbjct: 555 RVESLISDCFAAVLLLQPDNGHLVLGSAPSLRRTCRDVGQNCPENPAVCACAAAIRTGKQ 614

Query: 733 LLAM----TPRELDAEEFAEQVGERIRRLREEGSLTFESAHRTRNGTVLPVEIHAKLLDF 788
           ++A     + +  D  +FA  +G     L+   S    S  +   GT+       +  + 
Sbjct: 615 IIAEHIDDSEQWQDCRDFASALG-----LKTAWSTPIVSPGKEVLGTLSLYFRQGRRPNR 669

Query: 789 DGKPVVLSIARDIT---DRKRLEQALMREATTDPLTGIRNRRQFFVDAEREMGRAVRYGR 845
             K V+    R      DR R   +L R AT D LTG+ NR +F    E E+ RA R GR
Sbjct: 670 FDKDVIEHACRQAAIAIDRNRAMDSLHRLATVDTLTGLNNRSRFLDQGEAEITRARRLGR 729

Query: 846 PLAVLMLDLDRFKRVNDRFGHHAGDAVLMGCVQACQQALRETDILGRLGGEEFAAVLLET 905
            +AVLMLD+D FKR+ND  GH AGD  L        + LR  DI GRLGGEEFA +L ET
Sbjct: 730 SVAVLMLDVDHFKRINDTHGHGAGDVALKIVAAIIARELRAIDICGRLGGEEFAVMLPET 789

Query: 906 DLDDALAAAERLRRAVEEMDVPFS-GQRLRCTVSIGLALRGPGDGALDDILRRADSALYA 964
           D   A+ AAERLR+AV +  V  + G  L  TVSIG  +  P D  +D +L RAD ALY 
Sbjct: 790 DGQGAMQAAERLRQAVAQEKVRVAEGVELGITVSIGATILAPQDANIDHLLARADGALYE 849

Query: 965 AKEAGRNRVMLARAVN 980
           AK +GRN  + A   N
Sbjct: 850 AKRSGRNLALYAAPGN 865



 Score = 29.6 bits (65), Expect = 0.001
 Identities = 14/40 (35%), Positives = 25/40 (62%)

Query: 271 TYRTLRGEYGRTWGSVWLFEDVTAEVRAQEALTRSEERLK 310
           T  +++GE G+    V +F D+T + RA++ L  S +RL+
Sbjct: 368 TITSVKGEGGQVINYVCVFTDMTEQKRARDDLKESHQRLE 407