Pairwise Alignments

Query, 1000 a.a., diguanylate cyclase with PAS/PAC and GAF sensors (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 409 a.a., GGDEF domain-like protein from Marinobacter adhaerens HP15

 Score =  159 bits (402), Expect = 4e-43
 Identities = 111/305 (36%), Positives = 166/305 (54%), Gaps = 9/305 (2%)

Query: 680 QRRAAEAARQRSEAHYRLLFEAAADAIF--LHDPEGKFLDVNEVACRRLGYTRRELL--- 734
           Q R  +A R+R E   ++L +      +  L+DP+     V++   +  GY   EL+   
Sbjct: 97  QHRQRQALRER-ERQLQILMDNLPGMAYRCLYDPDWTMKFVSQGCTKLTGYEPDELVNNR 155

Query: 735 AMTPRELDAEEFAEQVGERIR-RLREEGSLTFESAHRTRNGTVLPV-EIHAKLLDFDGKP 792
             +   L ++   +Q+ E++R  L +E S + E     ++G+ + V E    + + DG  
Sbjct: 156 VTSYAALVSDASNQQLFEQVRVALEKEESFSLEYEVTRKDGSRIWVWERGRGVQEDDGSL 215

Query: 793 VVLSIARDITDRKRLEQALMREATTDPLTGIRNRRQFFVDAEREMGRAVRYGRPLAVLML 852
            +  I  DI+DRK LE  L + AT DPLTG+ NRR+     + E+ RA RY RP+AVL +
Sbjct: 216 HLEGIILDISDRKVLETELEQMATRDPLTGLLNRREMSRVLDEELQRARRYQRPMAVLWV 275

Query: 853 DLDRFKRVNDRFGHHAGDAVLMGCVQACQQALRETDILGRLGGEEFAAVLLETDLDDALA 912
           D D FK VND +GH AGD+VL    +    ++R  D +GR GGEEF  VL E DL++A  
Sbjct: 276 DFDHFKDVNDTYGHAAGDSVLRAISRLLLGSVRSVDSIGRFGGEEFVIVLPEMDLEEAQE 335

Query: 913 AAERLRRAVEEMDVPF-SGQRLRCTVSIGLALRGPGDGALDDILRRADSALYAAKEAGRN 971
            AERLRR V E   P  +G+ +  T+S+G+A+          +   AD A+Y AK+ GRN
Sbjct: 336 TAERLRRKVAEEPQPLGNGEAVPLTISVGVAVYPDHGQTASTLCAAADKAMYLAKDRGRN 395

Query: 972 RVMLA 976
            V +A
Sbjct: 396 CVAMA 400



 Score = 33.9 bits (76), Expect = 2e-05
 Identities = 24/107 (22%), Positives = 49/107 (45%), Gaps = 5/107 (4%)

Query: 470 VNDACARMLGYATDEM---RGQHFSRFMHDDETTLAATTLTSLLDRTQSTSRLQHRLRGK 526
           V+  C ++ GY  DE+   R   ++  + D         +   L++ +S S L++ +  K
Sbjct: 136 VSQGCTKLTGYEPDELVNNRVTSYAALVSDASNQQLFEQVRVALEKEESFS-LEYEVTRK 194

Query: 527 DGSYLWTDISASPLEGPNGEVEAALAIIVDINEQRTAQQAQEDSERR 573
           DGS +W       ++  +G +     II+DI++++  +   E    R
Sbjct: 195 DGSRIWVWERGRGVQEDDGSLHLE-GIILDISDRKVLETELEQMATR 240



 Score = 30.4 bits (67), Expect = 2e-04
 Identities = 31/138 (22%), Positives = 60/138 (43%), Gaps = 9/138 (6%)

Query: 557 INEQRTAQQAQEDSERRYRALFENAQVGIFRTRISDGRFMEANSR-IIEMYGWPDRAEFM 615
           +N Q   +QA  + ER+ + L +N     +R        M+  S+   ++ G+       
Sbjct: 94  LNLQHRQRQALRERERQLQILMDNLPGMAYRCLYDPDWTMKFVSQGCTKLTGYEPDELVN 153

Query: 616 EKMRSTEWYVDSEARGRM---VGTLLRRGEFRNIEVEMRRRDGSTVWFEYSGK----LDG 668
            ++ S    V   +  ++   V   L + E  ++E E+ R+DGS +W    G+     DG
Sbjct: 154 NRVTSYAALVSDASNQQLFEQVRVALEKEESFSLEYEVTRKDGSRIWVWERGRGVQEDDG 213

Query: 669 DT-IIGVAQDVTQRRAAE 685
              + G+  D++ R+  E
Sbjct: 214 SLHLEGIILDISDRKVLE 231