Pairwise Alignments
Query, 1000 a.a., diguanylate cyclase with PAS/PAC and GAF sensors (RefSeq) from Desulfovibrio vulgaris Miyazaki F
Subject, 1228 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) (RefSeq) from Shewanella sp. ANA-3
Score = 157 bits (396), Expect = 6e-42
Identities = 125/464 (26%), Positives = 218/464 (46%), Gaps = 33/464 (7%)
Query: 548 EAALAIIVDINEQRTAQQAQEDSERRYRALFENAQVGIFRTRISDGRFMEANSRIIEMYG 607
E +A+ +I +T Q +SE+RYR LF+ A VG R+ DG+F+ N +E+ G
Sbjct: 532 EKTMALSKEIARSQTFQATLMESEQRYRTLFDKAPVGHALKRLEDGQFVAINQAFMEITG 591
Query: 608 WPDRAEFMEKMRSTE-W------YVDSEARGRMVGTLLRRGEFRNIEVEMRRRDGSTVWF 660
+ +E++++ + W Y SE + L + + + R +DG V
Sbjct: 592 YT-----LEELQAIDPWELTPIRYQSSETE--QLERLKQTRRYGPYQKHYRHKDGQLVAV 644
Query: 661 EYSGKL----DGDTII-GVAQDVTQRRAAEAARQRSEAHYRLL---FEAAADAIFLHDPE 712
+G L +G+ +I + +D+T++ +R+ A LL F+ + + I + D
Sbjct: 645 RLNGSLVTAANGEQLILFIVEDITEQ-------ERTVARVNLLAQVFQQSGEGITIMDAN 697
Query: 713 GKFLDVNEVACRRLGYTRRELLAMTPRELDAEEFAEQVGERIRR-LREEGSLTFESAHRT 771
+DVN + GY+R E++ R L+AE + ++R L + G E R
Sbjct: 698 DIIVDVNSAFTQITGYSRDEIIGKNCRFLEAERTDRSIDAQVRAALEQTGFWQGEVWDRH 757
Query: 772 RNGTVLPVEIHAKLLDFDGKPVVLSIAR--DITDRKRLEQALMREATTDPLTGIRNRRQF 829
+ G P + ++ + + I DI++RK E+ + A D LT + NR
Sbjct: 758 KEGFDFPKWLMMSIVRDETGAISHYIGSFTDISERKVNEERIHFLAHHDSLTLLPNRLSL 817
Query: 830 FVDAEREMGRAVRYGRPLAVLMLDLDRFKRVNDRFGHHAGDAVLMGCVQACQQALRETDI 889
E+ A +AV+ +D+D FK +ND GHH GD +L+ + + + DI
Sbjct: 818 QSRLEKVFQEAFISQTQIAVMFIDMDHFKNINDTLGHHVGDMLLLEVARRLKNIMGNDDI 877
Query: 890 LGRLGGEEFAAVLLETDLDDALAAAERLRRAVEEMDVPFSGQRLRCTVSIGLALRGPGDG 949
+ RLGG+EF VL +TD D AE LR + + + + L + SIG++L
Sbjct: 878 VARLGGDEFVVVLSDTDHDRVAKVAEALRSGLNQTYL-IDNKPLHSSPSIGISLFPTDGD 936
Query: 950 ALDDILRRADSALYAAKEAGRNRVMLARAVNSGAEDQNRRWSSG 993
+++ +++ AD A+Y AK AGRN A + + ++ +G
Sbjct: 937 SVEALMKNADMAMYRAKAAGRNNYQFFTAAMNTLVTERQQIETG 980
Score = 41.6 bits (96), Expect = 3e-07
Identities = 62/246 (25%), Positives = 105/246 (42%), Gaps = 35/246 (14%)
Query: 418 GSPARVVGTHMDITAAVSQRLA--------LGRSEELFRGIFSTASVGIVLLD-RFGLLV 468
G R+ + T A+S+ +A L SE+ +R +F A VG L G V
Sbjct: 521 GERHRIAEKVAEKTMALSKEIARSQTFQATLMESEQRYRTLFDKAPVGHALKRLEDGQFV 580
Query: 469 RVNDACARMLGYATDEMRGQHFSRFMHDDETTLAA--TTLTSLLDRTQSTSRL---QHRL 523
+N A + GY +E++ + E T ++ T L+R + T R Q
Sbjct: 581 AINQAFMEITGYTLEELQA------IDPWELTPIRYQSSETEQLERLKQTRRYGPYQKHY 634
Query: 524 RGKDGSYLWTDISASPLEGPNGEVEAALAIIVDINEQ-RTAQQAQEDSERRYRALFENAQ 582
R KDG + ++ S + NGE + L I+ DI EQ RT + ++ +F+ +
Sbjct: 635 RHKDGQLVAVRLNGSLVTAANGE-QLILFIVEDITEQERTVARVNLLAQ-----VFQQSG 688
Query: 583 VGIFRTRISDGRFMEANSRIIEMYGWP------DRAEFMEKMRSTEWYVDSEARGRMVGT 636
GI +D ++ NS ++ G+ F+E R T+ +D++ R + T
Sbjct: 689 EGITIMDAND-IIVDVNSAFTQITGYSRDEIIGKNCRFLEAER-TDRSIDAQVRAALEQT 746
Query: 637 LLRRGE 642
+GE
Sbjct: 747 GFWQGE 752
Score = 38.5 bits (88), Expect = 3e-06
Identities = 63/293 (21%), Positives = 121/293 (41%), Gaps = 44/293 (15%)
Query: 414 RREDGSPARVVGTHMDITAAVSQRLALGRSEE------------LFRGIFSTASVGIVLL 461
R +DG V +TAA ++L L E+ L +F + GI ++
Sbjct: 635 RHKDGQLVAVRLNGSLVTAANGEQLILFIVEDITEQERTVARVNLLAQVFQQSGEGITIM 694
Query: 462 DRFGLLVRVNDACARMLGYATDEMRGQHFSRFMHDDET--TLAATTLTSLLDRTQSTSRL 519
D ++V VN A ++ GY+ DE+ G++ RF+ + T ++ A +L + T
Sbjct: 695 DANDIIVDVNSAFTQITGYSRDEIIGKN-CRFLEAERTDRSIDAQVRAAL----EQTGFW 749
Query: 520 QHRL--RGKDGSYLWTDISASPLEGPNGEVEAALAIIVDINEQRTAQQAQEDSERRYRAL 577
Q + R K+G + S + G + + DI+E++ +E R L
Sbjct: 750 QGEVWDRHKEGFDFPKWLMMSIVRDETGAISHYIGSFTDISERKV-------NEERIHFL 802
Query: 578 FENAQVGIFRTRISDGRFMEANSRIIEMYGWPDRAEFMEKMRSTEWYVDSEARGRMVGTL 637
+ + + R+S SR+ +++ + F+ + + ++D + + TL
Sbjct: 803 AHHDSLTLLPNRLS------LQSRLEKVF----QEAFISQTQIAVMFIDMDHFKNINDTL 852
Query: 638 LRR-GEFRNIEVEMRRRD--GSTVWFEYSGKLDGDTIIGVAQDVTQRRAAEAA 687
G+ +EV R ++ G+ + +L GD + V D R A+ A
Sbjct: 853 GHHVGDMLLLEVARRLKNIMGND---DIVARLGGDEFVVVLSDTDHDRVAKVA 902