Pairwise Alignments

Query, 607 a.a., integral membrane sensor signal transduction histidine kinase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 821 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  140 bits (353), Expect = 2e-37
 Identities = 95/297 (31%), Positives = 151/297 (50%), Gaps = 23/297 (7%)

Query: 292 ASIAVLVLGMFLAQRIIERIDGLEREMAALNAQVVEAGKLSALGEMAAGIAHEINNPVAI 351
           A+ A+  L   L QR+ ER      E+     ++ ++ K+ A+G++  G+AH+ NN +A 
Sbjct: 412 ATAALRALNETLEQRVAERT----AELIQAEEKLRQSQKMEAVGQLTGGLAHDFNNLLAG 467

Query: 352 MMEEAGWIEDVLGELQEQDAVREIGDSARQIRTQGVRCRDITHKLLSFARRSDREVHAVD 411
           +   +G +E ++     Q  + +I       ++   R   +TH+LL+F+RR   +   VD
Sbjct: 468 I---SGALE-LMSMRIAQGRLNDIDKYMLSAQSAAKRAAALTHRLLAFSRRQTLDPRPVD 523

Query: 412 INAMVTEMVELSGQKARTVSVHVVVAMAEGLPPVAASPSELQQVFLNLFNNAFDAMEGSG 471
           +N +V  M EL  Q+    S+ +    A  L P +   S+L+   LNL  N+ DAM   G
Sbjct: 524 VNLLVEGMTELI-QRTVGPSIRLETISAPDLWPASVDTSQLENAILNLCINSRDAMPDGG 582

Query: 472 G-TLKVATLMSDNGMVAVN-----------VADTGPGMPEAILQRIYDPFFTTKPVGKGT 519
             T++ A    D+     N           V DTG GM   ++ + +DPFFTTKP+G+GT
Sbjct: 583 RITIETANQWLDSDAAQANDLPAGEYLSLTVTDTGTGMTPGVIAKAFDPFFTTKPIGEGT 642

Query: 520 GLGLSICYGIINKMGGEIKVSSIVGVGTTFQVLLPPF--DPAVHAAQAAQGTGLLAG 574
           GLGLS+ YG   + GG++++SS VG GT   + LP    +  + A   AQ    L G
Sbjct: 643 GLGLSMIYGFAKQSGGQVRISSEVGRGTAMCIYLPRHLGETGIGAVVPAQTAAALTG 699