Pairwise Alignments

Query, 481 a.a., DNA-directed DNA polymerase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 355 a.a., DNA polymerase IV (RefSeq) from Shewanella amazonensis SB2B

 Score =  235 bits (600), Expect = 2e-66
 Identities = 138/346 (39%), Positives = 198/346 (57%), Gaps = 19/346 (5%)

Query: 4   RWIMHIDMDAFFASVEQMDDPSLRGKPVAVGGS--HRGVVSAASYEARRFGVRSALPMST 61
           R I+HIDMD +FA+VE  D P  RGKP+AVGGS   RGV+S  +YEAR FGVRSA+  + 
Sbjct: 2   RKIIHIDMDCYFAAVEMRDFPQYRGKPLAVGGSSDRRGVISTCNYEARAFGVRSAMASAY 61

Query: 62  ALRLCPHLIVVPGRMRRYAEISHRIMDALREFSPLVEPASVDEAYLDATGLERLFGPVEN 121
           AL+LCP+LI+VPGRM  Y  +S +I +    ++ L+EP S+DEAYLD +      G    
Sbjct: 62  ALKLCPNLILVPGRMEVYKAVSQQIREIFSRYTSLIEPLSLDEAYLDVSDCSLYQGSATR 121

Query: 122 MGMAVKARVLDVTGGLTCSVGAAPVKFLAKIASDVNKPNGLFILYPEDVAEFLRTLPVGR 181
           +  A+++ +   TG LT S G +P+KF+AK+ASD+NKPNG +++ P+ +  F+R L +G+
Sbjct: 122 IAEAIRSDIFKETG-LTASAGVSPIKFVAKVASDLNKPNGQYVVSPDTLMHFVRALSLGK 180

Query: 182 IPGVGKRSLDALEQLGVRFAGDVLRYSREFWERRFGKGGVHLHERASGVDPREVEPYSEP 241
           IPGVGK + + L  LG++   DV +  +      FGK G  L+ERA G D R +  + E 
Sbjct: 181 IPGVGKVTEEKLNALGLKTCADVQQVPQTLLTEHFGKFGAVLYERAHGRDERAIVSHRER 240

Query: 242 KSESAENTFSEDTADRA----VLRRWLLAQAERVGASLRRQRLAGRTITLKVKYADFRSI 297
           KS   E T  +D   R     VL   +     R+G S   +R+    + +K+K+ DFR  
Sbjct: 241 KSVGVETTLPKDLHTREACLDVLSSLIPELNRRLGRSASGRRI--HKLVVKLKFDDFRQT 298

Query: 298 SRSHSLPEPTASTETIFDEACRLLDALTLADKVRLIGVGVSNFGPA 343
           +      EP+           RL ++L     VR  G G+   G A
Sbjct: 299 TIESRAEEPSV----------RLFESLLSQAFVRAEGRGIRLVGIA 334