Pairwise Alignments

Query, 481 a.a., DNA-directed DNA polymerase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 366 a.a., DNA polymerase IV from Pedobacter sp. GW460-11-11-14-LB5

 Score =  245 bits (625), Expect = 2e-69
 Identities = 138/340 (40%), Positives = 204/340 (60%), Gaps = 4/340 (1%)

Query: 4   RWIMHIDMDAFFASVEQMDDPSLRGKPVAVGGS--HRGVVSAASYEARRFGVRSALPMST 61
           R I+HIDMDAF+ASVEQ D P  RGKP+ VGG    RGVVS ASYEAR++G+RSA+  S 
Sbjct: 10  RKIIHIDMDAFYASVEQRDFPEYRGKPLVVGGKPDSRGVVSTASYEARQYGIRSAMSSSK 69

Query: 62  ALRLCPHLIVVPGRMRRYAEISHRIMDALREFSPLVEPASVDEAYLDATGLERLFGPVEN 121
           A +LCP  I V  R   Y  +S  + +    ++ L+EP S+DEAYLD T  +   G   +
Sbjct: 70  AYQLCPTAIFVYPRFDAYTAVSKALREIFSRYTDLIEPLSLDEAYLDVTEDKLGIGSAID 129

Query: 122 MGMAVKARVLDVTGGLTCSVGAAPVKFLAKIASDVNKPNGLFILYPEDVAEFLRTLPVGR 181
           +  ++K  + +    LT S G +  KF+AK+ASD+NKP+GL  + P  +  F+  LPV +
Sbjct: 130 IAQSIKDAIKNELN-LTASAGVSINKFVAKVASDMNKPDGLTFIGPSKIKAFMEKLPVEK 188

Query: 182 IPGVGKRSLDALEQLGVRFAGDVLRYSREFWERRFGKGGVHLHERASGVDPREVEPYSEP 241
             GVGK +   ++ + +    D+ + +      +FGK G   ++   G+D R V+ + E 
Sbjct: 189 FFGVGKVTGAKMKAMQINTGADLKKLTEAQLVAQFGKSGRFYYKIVRGIDERPVQSHRET 248

Query: 242 KSESAENTFSEDTADRAVLRRWLLAQAERVGASLRRQRLAGRTITLKVKYADFRSISRSH 301
           KS  AE+TF EDT + +V+   L   +E V   L + +L+G+T+TLK+K+ADF+ I+RS 
Sbjct: 249 KSVGAEDTFPEDTNEDSVMHDLLKQISETVAKRLEKYQLSGKTVTLKIKFADFKLITRSR 308

Query: 302 SLPEPTASTETIFDEACRLLDALTL-ADKVRLIGVGVSNF 340
           S   P    E I+ EA +LL+   L   +VRL+G+ +S F
Sbjct: 309 SFAAPINKAEVIYAEAIKLLEEAALGTTQVRLLGITLSRF 348