Pairwise Alignments

Query, 481 a.a., DNA-directed DNA polymerase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 439 a.a., DNA polymerase IV from Pedobacter sp. GW460-11-11-14-LB5

 Score =  197 bits (501), Expect = 6e-55
 Identities = 118/340 (34%), Positives = 195/340 (57%), Gaps = 7/340 (2%)

Query: 3   QRWIMHIDMDAFFASVEQMDDPSLRGKPVAVGGS-HRGVVSAASYEARRFGVRSALPMST 61
           +R I+H+D DAFF SVE   +P L GKPV +GG   RGVV++ SYEAR++G+ SA+P  T
Sbjct: 4   ERQIIHMDQDAFFVSVEIRKNPKLSGKPVIIGGGGDRGVVASCSYEARQYGIHSAMPGRT 63

Query: 62  ALRLCPHLIVVPGRMRRYAEISHRIMDALREFSPLVEPASVDEAYLDATGLERLFGPVEN 121
           A  LCP  I + G M  Y++ SH I + + +  PL E AS+DE Y+D TG++R FG ++ 
Sbjct: 64  AKLLCPQAIFLKGDMEEYSKASHEITEVIADKVPLFEKASIDEHYIDMTGMDRFFGCMKF 123

Query: 122 MGMAVKARVLDVTGGLTCSVGAAPVKFLAKIASDVNKPNG-LFILYPEDVAEFLRTLPVG 180
                +  + ++  GL  S G +  K +AKIA++ +KP+G + + +P+ +  FL  L + 
Sbjct: 124 ASELRQTIIREM--GLPISFGLSINKTVAKIATNESKPSGEMQVTFPQ-LRPFLDPLAIH 180

Query: 181 RIPGVGKRSLDALEQLGVRFAGDVLRYSREFWERRFGKGGVHLHERASGVDPREVEPYSE 240
           +IPG+G  +   L ++GVR    + +  ++   +  G+ G+ L ++A+G+D   V PY E
Sbjct: 181 KIPGIGHATYKKLSEMGVREILTLTQIPQQLMFKILGQHGLSLWQKANGIDLSPVVPYRE 240

Query: 241 PKSESAENTFSEDTADRAVLRRWLLAQAERVGASLRRQRLAGRTITLKVKYADFRSISRS 300
            KS   + TF  DT D A L+  +      +   LR Q+     IT+ V+Y +F ++++ 
Sbjct: 241 RKSIGTQATFESDTMDMAKLKAIITGMVTGLTFQLRNQKKLTACITVTVRYTNFETVTQQ 300

Query: 301 HSLPEPTASTETIFDEACRLLDALTLADK-VRLIGVGVSN 339
             +P  T+    +  +A  L + +      +RL+GV +S+
Sbjct: 301 ERIPY-TSLDSFLISKAHSLFEKVYAKRMLLRLVGVKLSH 339