Pairwise Alignments

Query, 481 a.a., DNA-directed DNA polymerase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 359 a.a., DNA polymerase IV (RefSeq) from Shewanella loihica PV-4

 Score =  250 bits (638), Expect = 6e-71
 Identities = 142/338 (42%), Positives = 209/338 (61%), Gaps = 12/338 (3%)

Query: 6   IMHIDMDAFFASVEQMDDPSLRGKPVAVGG--SHRGVVSAASYEARRFGVRSALPMSTAL 63
           I+H+DMD FFA+VE  D P LRGKP+AVGG    RGV+S  +YEAR+FGVRSA+  + AL
Sbjct: 4   IIHVDMDCFFAAVEMRDFPELRGKPIAVGGRSDRRGVISTCNYEARKFGVRSAMASAYAL 63

Query: 64  RLCPHLIVVPGRMRRYAEISHRIMDALREFSPLVEPASVDEAYLDATGLERLFGPVENMG 123
           +LCP LI+VPGRM  Y E+S +I +    ++ L+EP S+DEAYLD +   +  G    + 
Sbjct: 64  KLCPDLILVPGRMSVYKEVSAQIREVFARYTELIEPLSLDEAYLDVSDCTQHQGSATLIA 123

Query: 124 MAVKARVLDVTGGLTCSVGAAPVKFLAKIASDVNKPNGLFILYPEDVAEFLRTLPVGRIP 183
            A++  + +VTG LT S G APVKFLAKIASD+NKPNG +++ P+ + EF++TL + +IP
Sbjct: 124 EAIRREIFEVTG-LTASAGIAPVKFLAKIASDLNKPNGQYVITPQMIPEFVKTLALIKIP 182

Query: 184 GVGKRSLDALEQLGVRFAGDVLRYSREFWERRFGKGGVHLHERASGVDPREVEPYSEPKS 243
           GVGK +   LE +G+    DV   SR+    RFGK G  L++RA G+DPR + P+ E KS
Sbjct: 183 GVGKVTAAKLETMGLITCADVQACSRQSLMERFGKFGGVLYDRAQGIDPRGISPHRERKS 242

Query: 244 ESAENTFSEDTAD----RAVLRRWLLAQAERVGASLRRQRLAGRTITLKVKYADFRSISR 299
              E T ++D       +AV+ + +   + R+  S + +R+  + +  K+K+ DF+  + 
Sbjct: 243 VGVETTLAKDIYTYEQCQAVMPQLIQELSGRISRSAKSRRIHKQVV--KLKFDDFKQTTI 300

Query: 300 SHSLPEPTASTETIFDEACRLLDALTLADKVRLIGVGV 337
                E   S +  +D   + L+       +RL+GV V
Sbjct: 301 EQRSDE--VSVKLFYDLLKQALER-RAGRGIRLLGVSV 335