Pairwise Alignments

Query, 481 a.a., DNA-directed DNA polymerase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 386 a.a., DNA polymerase IV (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  494 bits (1273), Expect = e-144
 Identities = 253/349 (72%), Positives = 293/349 (83%), Gaps = 5/349 (1%)

Query: 7   MHIDMDAFFASVEQMDDPSLRGKPVAVGGS-HRGVVSAASYEARRFGVRSALPMSTALRL 65
           MHIDMDAFFASVEQ+DDPSLRG+PV VGGS  RGVVSAASYEARR+GVRSA+P  TA RL
Sbjct: 1   MHIDMDAFFASVEQLDDPSLRGRPVIVGGSSERGVVSAASYEARRYGVRSAMPTVTARRL 60

Query: 66  CPHLIVVPGRMRRYAEISHRIMDALREFSPLVEPASVDEAYLDATGLERLFGPVENMGMA 125
           CPH + V GR  RYAE+S  +M  L +FSP+VE ASVDEAYLDATGLERLFGPV+ M   
Sbjct: 61  CPHGVFVSGRRHRYAEVSRMVMAVLHDFSPVVEQASVDEAYLDATGLERLFGPVDEMAQR 120

Query: 126 VKARVLDVTGGLTCSVGAAPVKFLAKIASDVNKPNGLFILYPEDVAEFLRTLPVGRIPGV 185
           +K RV + TGGLTCSVG APVKFLAKIASDVNKP+G+FIL PEDVA FL TLPVGRIPGV
Sbjct: 121 LKGRVREATGGLTCSVGLAPVKFLAKIASDVNKPDGVFILPPEDVAAFLATLPVGRIPGV 180

Query: 186 GKRSLDALEQLGVRFAGDVLRYSREFWERRFGKGGVHLHERASGVDPREVEPYSEPKSES 245
           GKR L++L+ LGVR AGDVLR+   FWERRFGKGG+ L++RA G+DPR +EP++ PKSES
Sbjct: 181 GKRMLESLDLLGVRTAGDVLRHPVSFWERRFGKGGLVLYDRARGIDPRPLEPWTPPKSES 240

Query: 246 AENTFSEDTADRAVLRRWLLAQAERVGASLRRQRLAGRTITLKVKYADFRSISRSHSLPE 305
           AE T + DTADRAVLRRWLLAQAERVG SLRRQ LAGRTITLKVKYADFR ++RS +LPE
Sbjct: 241 AEVTLAADTADRAVLRRWLLAQAERVGGSLRRQGLAGRTITLKVKYADFRQLTRSRTLPE 300

Query: 306 PTASTETIFDEACRLLDALTLADKVRLIGVGVSNFGPAHHGPRQLTLPL 354
           P ++T+TIF+EA  LL+AL L  KVRL+G+GVS+FG    G RQ++LP+
Sbjct: 301 PVSATQTIFEEAWALLEALDLEAKVRLVGLGVSHFG----GERQMSLPI 345



 Score = 40.8 bits (94), Expect = 8e-08
 Identities = 20/42 (47%), Positives = 27/42 (64%)

Query: 435 AIPAESIPPPDEKRRKKLDAALDALRDRHGREAVVRGRLFGF 476
           ++P   +P  D+ RR++LDA LD LR R G  AV+RG L  F
Sbjct: 342 SLPIGGMPRRDDTRRERLDATLDRLRARFGAGAVMRGDLVDF 383