Pairwise Alignments

Query, 481 a.a., DNA-directed DNA polymerase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 417 a.a., DNA-directed DNA polymerase (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  245 bits (626), Expect = 2e-69
 Identities = 146/341 (42%), Positives = 194/341 (56%)

Query: 6   IMHIDMDAFFASVEQMDDPSLRGKPVAVGGSHRGVVSAASYEARRFGVRSALPMSTALRL 65
           I H+D DAFFASVE+ D+P+L  +PV +GG  RGVVS A Y AR  GVRSA+PM  AL L
Sbjct: 37  IAHMDCDAFFASVEKRDNPALADRPVIIGGGRRGVVSTACYVARIKGVRSAMPMFKALAL 96

Query: 66  CPHLIVVPGRMRRYAEISHRIMDALREFSPLVEPASVDEAYLDATGLERLFGPVENMGMA 125
           CP  +V+  R   Y E S  I   + E +P VEP S+DEA++D  G  RL G    + +A
Sbjct: 97  CPDAVVIKPRFEAYVEASRAIRAMMDEMTPDVEPLSLDEAFMDLGGTARLHGAPPAVMLA 156

Query: 126 VKARVLDVTGGLTCSVGAAPVKFLAKIASDVNKPNGLFILYPEDVAEFLRTLPVGRIPGV 185
              + ++   GLT S+G +  KFLAKIASD++KP G  ++   +  +FL   PV  I GV
Sbjct: 157 RLVKRMEDELGLTGSIGLSHNKFLAKIASDLDKPRGFAVIGKAETLDFLADKPVRMIWGV 216

Query: 186 GKRSLDALEQLGVRFAGDVLRYSREFWERRFGKGGVHLHERASGVDPREVEPYSEPKSES 245
           G     ALE  G+R   D+ R+ +     RFG  G+ L   A G D R V   S  KS S
Sbjct: 217 GAAGQAALEAAGIRTFTDLARWEQTDLVARFGSMGLRLWHLARGEDARAVSGRSPVKSIS 276

Query: 246 AENTFSEDTADRAVLRRWLLAQAERVGASLRRQRLAGRTITLKVKYADFRSISRSHSLPE 305
            E TFSEDTAD  +L   +   AE+V    + Q LAGR + LK+K +D   I+R H+L +
Sbjct: 277 NETTFSEDTADPDLLEGHVWRMAEKVAGRAKAQGLAGRVVVLKLKKSDHGLITRRHALRD 336

Query: 306 PTASTETIFDEACRLLDALTLADKVRLIGVGVSNFGPAHHG 346
            T   + +F EA  L  A+      RL+GVG+S+  P   G
Sbjct: 337 ATQIADRVFREAMALFRAVPDGQSYRLLGVGLSDLVPEDGG 377



 Score = 29.6 bits (65), Expect = 2e-04
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 444 PDEKRRKKLDAALDALRDRHGREAVVRGR 472
           P   RR + + A DA+R R G  A+V+GR
Sbjct: 386 PGAVRRARAERATDAIRARFGETAIVKGR 414