Pairwise Alignments

Query, 481 a.a., DNA-directed DNA polymerase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 357 a.a., DNA polymerase IV from Ralstonia sp. UNC404CL21Col

 Score =  233 bits (595), Expect = 6e-66
 Identities = 141/356 (39%), Positives = 202/356 (56%), Gaps = 21/356 (5%)

Query: 4   RWIMHIDMDAFFASVEQMDDPSLRGKPVAVGG--SHRGVVSAASYEARRFGVRSALPMST 61
           R I+H D D F+A++E  DDP L GKP+AVGG    RGVV+  +YEAR+FG+ SA+PM+ 
Sbjct: 2   RKIIHCDCDCFYAAIEMRDDPRLVGKPLAVGGRPERRGVVATCNYEARKFGIHSAMPMAQ 61

Query: 62  ALRLCPHLIVVPGRMRRYAEISHRIMDALREFSPLVEPASVDEAYLDATGLERLFGPVEN 121
           A++ CP L++VP  M +Y +++ +I      ++PLVEP S+DEAYLD T    L G    
Sbjct: 62  AVKRCPDLLIVPPSMEKYRQVARQIFAIYHSYTPLVEPLSLDEAYLDVTDSPMLAGSGTR 121

Query: 122 MGMAVKARVLDVTGGLTCSVGAAPVKFLAKIASDVNKPNGLFILYPEDVAEFLRTLPVGR 181
           +   ++ RV +  G +T S G AP KF+AKIASD NKP+GLF++ PE V  F+  LPV R
Sbjct: 122 IAEDIRRRVREEIG-ITVSAGVAPNKFIAKIASDWNKPDGLFVVRPEQVDAFVAELPVDR 180

Query: 182 IPGVGKRSLDALEQLGVRFAGDVLRYSREFWERRFGKGGVHLHERASGVDPREVEPYSEP 241
           + GVGK +   L +LG    GD+  +  +  ++ FG  G  LH+   G+D R+V+P    
Sbjct: 181 LFGVGKVTAAKLRRLGAETCGDLRAWGTDRLQQHFGVFGFRLHDLCRGIDHRQVQPSQIR 240

Query: 242 KSESAENTFSEDTADRAVLRRWLLAQAERVGASLRRQRLAGRTI---TLKVKYADFRS-- 296
           KS S E T++ D       +R L+   E++ A + R R AG  I    +K+++ADFR   
Sbjct: 241 KSVSVEETYATDLRTLEDCQRELIVLVEQLAARVERAR-AGNMIHKTYVKLRFADFRGTT 299

Query: 297 ---ISRSHSLPEPTASTETIFDEACRLLDALTLADKVRLIGVGVSNFGPAHHGPRQ 349
              IS   SLP  +      F+              VRL+GVGV  +    H  +Q
Sbjct: 300 VECISPQVSLPVFSKLLTQGFERR---------GIPVRLLGVGVRLYESDAHARQQ 346