Pairwise Alignments

Query, 481 a.a., DNA-directed DNA polymerase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 424 a.a., DNA polymerase IV from Bifidobacterium breve UCC2003

 Score =  203 bits (516), Expect = 1e-56
 Identities = 123/353 (34%), Positives = 192/353 (54%), Gaps = 15/353 (4%)

Query: 6   IMHIDMDAFFASVEQMDDPSLRGKPVAVGGSHRGVVSAASYEARRFGVRSALPMSTALRL 65
           ++HIDMDAF+AS+E   +P L+GKPV +G   R VVSAASYEARR+G+ SA+P + A +L
Sbjct: 23  VLHIDMDAFYASLEVARNPGLKGKPVIIGTGPRSVVSAASYEARRYGINSAMPAARAHQL 82

Query: 66  CPHLIVVPGRMRRYAEISHRIM-DALREFSPLVEPASVDEAYLDATGLERLFGPVENMGM 124
           CP  + +P  M  Y  +SHRIM +     +   E  SVDE Y+D +G    +     +G 
Sbjct: 83  CPDGVFLPVDMAYYRMMSHRIMHEVFLTITDQFEQVSVDEGYMDVSGALLEWDKPSAIGA 142

Query: 125 AVKARVLDVTGGLTCSVGAAPVKFLAKIASDVNKPNGLFILYPEDVAEFLRTLPVGRIPG 184
            ++ +V +    +TCSVG A  K +AK+AS   KPNG+ ++     A+F++ +P+  IPG
Sbjct: 143 WIRQQVAE-RFNVTCSVGIACNKLVAKMASTNAKPNGMLLIPAARSAQFVQMMPLRGIPG 201

Query: 185 VGKRSLDALEQLGVRFAGDVLRYSREFWERRFGKGGV--HLHERASGVDPREVEPYSEPK 242
           +G      L   GV    ++ +  +    +  G       L   + G+D RE+    E K
Sbjct: 202 IGPSLEKRLNAWGVHSVAELAQMDKAALIQATGSPAAARGLWAASHGLDSREIATTREEK 261

Query: 243 SESAENTFSEDTADRAVLRRWLLAQAERVGASLRRQRLAGRTITLKVKYADFRSISRSHS 302
           S  +E T +EDT D  ++ R L +  + V  +LRR+ L  RT+T+K+++AD    +RS +
Sbjct: 262 SIGSERTLTEDTRDMHIVCRLLRSACDEVARTLRRKGLVARTLTVKLRFADLSYQTRSFT 321

Query: 303 LPEPTASTETIFDEACRLLDAL-----------TLADKVRLIGVGVSNFGPAH 344
           + +PT +  T++ E  R L  +            L   +RL G+  S+   AH
Sbjct: 322 MEQPTDTASTLYPECVRQLKIMLGIPANAEPTTPLPKLIRLAGMSTSSLSEAH 374