Pairwise Alignments

Query, 481 a.a., DNA-directed DNA polymerase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 381 a.a., DNA-directed DNA polymerase from Burkholderia phytofirmans PsJN

 Score =  201 bits (511), Expect = 4e-56
 Identities = 136/381 (35%), Positives = 192/381 (50%), Gaps = 38/381 (9%)

Query: 4   RWIMHIDMDAFFASVEQMDDPSLRGKPVAVGGSH----------------------RGVV 41
           R I HIDMDAFFAS E    P LRG+ + V G                        RGV+
Sbjct: 5   RRIAHIDMDAFFASCELSQYPELRGQAMVVAGRRSDAPRVNADGTREFARLRDYAGRGVL 64

Query: 42  SAASYEARRFGVRSALPMSTALRLCPHLIVVPGRMRRYAEISHRIMDALREFSPLVEPAS 101
           + A+YEAR FGV S +P   A RL P  I++P     Y   S    DA+R  SP +E   
Sbjct: 65  TTATYEARAFGVHSGMPTMQAARLAPDAILLPVNFDLYRTYSRLFKDAIRSVSPTIEDVG 124

Query: 102 VDEAYLDATGLERLFGPVENMGMAVKARVLDVTGGLTCSVGAAPVKFLAKIASDVNKPNG 161
           +DE Y D   L  L    E +   +K+ V + T  LTCSVG AP K LAK+ SD+ KP+G
Sbjct: 125 IDEVYAD---LSLLNDESEQIARKLKSAVFEAT-NLTCSVGIAPNKLLAKLCSDIQKPDG 180

Query: 162 LFILYPEDVAEFLRTLPVGRIPGVGKRSLDALEQLGVRFAGDVLRYSREFWERRFGKG-G 220
           + IL  ED+   +  +   +I G+G ++   L  LG+   G++   S ++   +FG+  G
Sbjct: 181 ITILRLEDLQARIWPMAAKKINGIGPKANAKLTSLGITTIGEIAACSEQWLIEQFGRSYG 240

Query: 221 VHLHERASGVDPREVEPYSEPKSESAENTFSEDTADRAVLRRWLLAQA-----ERVGASL 275
             LH  + G+D R V  +SEP S S E TF +D    AV  R  L  A     E+V   L
Sbjct: 241 AWLHRVSHGLDDRPVVTHSEPVSMSRETTFEQDL--HAVRHRQELGTAFTRLCEQVALDL 298

Query: 276 RRQRLAGRTITLKVKYADFRSISRSHSLPEPTASTETIFDEACRLLDALTLADKVRLIGV 335
           +R+    R I +K+++ DF++++R  +LPEP A  + +   A + L  + L   +RL+GV
Sbjct: 299 QRKGYLARRIGIKLRFNDFQTVTRDVTLPEPVADAKALRHAATQCLKRVDLVKSIRLLGV 358

Query: 336 ---GVSNFGPAH-HGPRQLTL 352
              G+   G      P Q TL
Sbjct: 359 KAGGLQRPGATESDAPAQFTL 379