Pairwise Alignments

Query, 481 a.a., DNA-directed DNA polymerase (RefSeq) from Desulfovibrio vulgaris Miyazaki F

Subject, 385 a.a., DNA-directed DNA polymerase from Burkholderia phytofirmans PsJN

 Score =  207 bits (526), Expect = 7e-58
 Identities = 133/362 (36%), Positives = 184/362 (50%), Gaps = 30/362 (8%)

Query: 4   RWIMHIDMDAFFASVEQMDDPSLRGKPVAVGGSH----------------------RGVV 41
           R I H+DMDAF+ASVE +  P LRGKPV +GG                        RGVV
Sbjct: 6   RRIAHLDMDAFYASVELLRYPELRGKPVVIGGGRNATPKILADGTRRFARLRDYVGRGVV 65

Query: 42  SAASYEARRFGVRSALPMSTALRLCPHLIVVPGRMRRYAEISHRIMDALREFSPLVEPAS 101
           + ++YEAR FGV SA+ M  A +L P  I++P     Y   S    DA+  F+  +E   
Sbjct: 66  TTSTYEARAFGVFSAMGMMKAAQLAPDAILLPTDFESYRRYSRLFKDAVGAFTDQMEDRG 125

Query: 102 VDEAYLDATGLERLFGPVENMGMAVKARVLDVTGGLTCSVGAAPVKFLAKIASDVNKPNG 161
           +DE Y+D T +    G    +G  +KA V   T  LTCS+  AP K LAKI S+++KP+G
Sbjct: 126 IDEIYIDLTAVT---GESRELGDRIKAAVRQAT-SLTCSIAIAPNKLLAKIGSELDKPDG 181

Query: 162 LFILYPEDVAEFLRTLPVGRIPGVGKRSLDALEQLGVRFAGDVLRYSREFWERRFGKGGV 221
           L +L   D+   +  L   +I G+G R+ + L  +G+   G++        +  FG+   
Sbjct: 182 LTVLTMADLESRIWPLAAKKINGIGPRATERLAGIGIATVGELAAADPGLLQEHFGRTYA 241

Query: 222 HLHER-ASGVDPREVEPYSEPKSESAENTFSED---TADRAVLRRWLLAQAERVGASLRR 277
               R A G+D R +   SEPKS S E TF  D     DR  L   L    ERV   L+R
Sbjct: 242 EWFARVARGIDDRPIVVASEPKSMSRETTFERDMHVNRDRVTLTPALTRLCERVADDLQR 301

Query: 278 QRLAGRTITLKVKYADFRSISRSHSLPEPTASTETIFDEACRLLDALTLADKVRLIGVGV 337
           +   GRT+ LK+K+ADFR ++R  SLPE       I   A   L  + L  ++RLIGV +
Sbjct: 302 KGYGGRTVGLKIKFADFRIVTRDLSLPEAVTDAAAIRRAAGECLKRVPLDRRIRLIGVRI 361

Query: 338 SN 339
            +
Sbjct: 362 GS 363